Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G042701 Manihot esculenta HOM05D007228 ORTHO05D009099 0.0e+00 1303.9 658 100.0
Manes.06G128600 Manihot esculenta HOM05D007228 ORTHO05D009099 6.5e-253 877.5 660 70.8
Potri.015G109700 Populus trichocarpa HOM05D007228 ORTHO05D009099 2.6e-217 759.2 668 61.5
Ciclev10030919m.g Citrus clementina HOM05D007228 ORTHO05D009099 7.3e-212 741.1 668 58.2
Atru.chr6.1953 Acer truncatum HOM05D007228 ORTHO05D009099 1.2e-203 713.8 651 57.0
TWI39G0517 Tripterygium wilfordii HOM05D007228 ORTHO05D009099 1.6e-203 713.4 669 57.1
Dinv13695 Davidia involucrata HOM05D007228 ORTHO05D009099 6.6e-197 691.4 671 56.0
GSVIVG01014990001 Vitis vinifera HOM05D007228 ORTHO05D009099 2.4e-194 682.9 657 55.4
Duzib205G0703 Durio zibethinus HOM05D007228 ORTHO05D009099 1.2e-193 680.6 668 56.0
QL10p000149 Quercus lobata HOM05D007228 ORTHO05D009099 2.9e-192 676.0 654 55.2
Gohir.D12G197500 Gossypium hirsutum HOM05D007228 ORTHO05D009099 8.4e-192 674.5 660 54.4
Haze_07072 Corylus avellana HOM05D007228 ORTHO05D009099 4.6e-190 668.7 697 52.4
Cpa.g.sc13.201 Carica papaya HOM05D007228 ORTHO05D009099 3.0e-189 666.0 654 54.4
Gohir.A12G195100 Gossypium hirsutum HOM05D007228 ORTHO05D009099 4.0e-186 655.6 615 56.1
Gorai.008G212000 Gossypium raimondii HOM05D007228 ORTHO05D009099 6.9e-186 654.8 615 55.8
Hma1.2p1_0338F.1_g129520 Hydrangea macrophylla HOM05D007228 ORTHO05D009099 2.7e-182 642.9 654 53.8
Sabra15G0131800 Salix brachista HOM05D007228 ORTHO05D009099 1.6e-179 633.6 558 60.9
COL.COLO4_37286 Corchorus olitorius HOM05D007228 ORTHO05D009099 1.6e-174 617.1 671 50.8
Lj4g0027006 Lotus japonicus HOM05D007228 ORTHO05D009099 2.7e-174 616.3 653 51.8
FvH4_5g10000 Fragaria vesca HOM05D007228 ORTHO05D009099 1.0e-173 614.4 670 50.4
MD06G1128600 Malus domestica HOM05D007228 ORTHO05D009099 3.9e-173 612.5 702 50.6
FAN18G1110 Fragaria x ananassa HOM05D007228 ORTHO05D009099 7.4e-172 608.2 666 50.3
FAN04G0692 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.3e-171 607.4 662 50.3
FAN08G0661 Fragaria x ananassa HOM05D007228 ORTHO05D009099 1.6e-171 607.1 659 50.7
AL6G17680 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 4.5e-169 599.0 674 49.3
CARHR205770 Cardamine hirsuta HOM05D007228 ORTHO05D009099 1.3e-168 597.4 676 50.4
Rhsim08G0200200 Rhododendron simsii HOM05D007228 ORTHO05D009099 9.3e-167 591.3 692 47.5
Thhalv10012911m.g Eutrema salsugineum HOM05D007228 ORTHO05D009099 4.6e-166 589.0 657 50.2
BraA10t44962Z Brassica rapa HOM05D007228 ORTHO05D009099 6.1e-166 588.6 675 49.6
Ca_16830_v3 Cicer arietinum L. HOM05D007228 ORTHO05D009099 1.0e-165 587.8 667 49.3
A10p29130 Brassica napus HOM05D007228 ORTHO05D009099 5.1e-165 585.5 675 49.6
Carub.0006s0635 Capsella rubella HOM05D007228 ORTHO05D009099 5.1e-165 585.5 677 49.3
Glyma.08G006100 Glycine max HOM05D007228 ORTHO05D009099 2.5e-164 583.2 660 50.3
C09p69520 Brassica napus HOM05D007228 ORTHO05D009099 2.8e-163 579.7 658 50.2
BolC9t59696H Brassica oleracea HOM05D007228 ORTHO05D009099 2.8e-163 579.7 658 50.2
AT5G07380 Arabidopsis thaliana HOM05D007228 ORTHO05D009099 8.2e-163 578.2 675 48.6
RcHm_v2.0_Chr7g0188261 Rosa chinensis HOM05D007228 ORTHO05D009099 4.5e-161 572.4 563 53.6
Aqoxy5G02968 Aquilegia oxysepala HOM05D007228 ORTHO05D009099 1.0e-160 571.2 662 48.0
arahy.Tifrunner.gnm1.ann1.E4K3LT Arachis hypogaea HOM05D007228 ORTHO05D009099 1.3e-160 570.9 651 48.5
Medtr8g095540 Medicago truncatula HOM05D007228 ORTHO05D009099 2.5e-159 566.6 649 49.2
BcaC06g32443 Brassica carinata HOM05D007228 ORTHO05D009099 4.2e-159 565.8 657 49.3
THA.LOC104819419 Tarenaya hassleriana HOM05D007228 ORTHO05D009099 5.5e-159 565.5 634 49.7
arahy.Tifrunner.gnm1.ann1.RK1GDQ Arachis hypogaea HOM05D007228 ORTHO05D009099 9.4e-159 564.7 651 48.2
Prupe.5G138400 Prunus persica HOM05D007228 ORTHO05D009099 2.8e-155 553.1 503 56.1
Actinidia18280 Actinidia chinensis HOM05D007228 ORTHO05D009099 6.3e-155 552.0 658 47.9
Solyc03g117990.1 Solanum lycopersicum HOM05D007228 ORTHO05D009099 1.1e-154 551.2 656 46.6
VMungo0251G0919 Vigna mungo HOM05D007228 ORTHO05D009099 5.3e-154 548.9 670 48.8
Peaxi162Scf00314g00833 Petunia axillaris HOM05D007228 ORTHO05D009099 1.2e-153 547.7 656 47.0
Sopen03g036890 Solanum pennellii HOM05D007228 ORTHO05D009099 2.6e-153 546.6 656 46.8
Cc04_g05590 Coffea canephora HOM05D007228 ORTHO05D009099 1.0e-152 544.7 667 46.8
Psat7g040280 Pisum sativum HOM05D007228 ORTHO05D009099 1.1e-151 541.2 635 48.7
PSO017G4664 Papaver somniferum HOM05D007228 ORTHO05D009099 6.1e-150 535.4 759 42.8
Thecc.03G143400 Theobroma cacao HOM05D007228 ORTHO05D009099 6.1e-150 535.4 443 62.3
Cfa018687 Carpinus fangiana HOM05D007228 ORTHO05D009099 1.4e-149 534.3 501 54.7
Migut.D01167 Erythranthe guttata HOM05D007228 ORTHO05D009099 3.9e-149 532.7 671 46.9
PSO478G4831 Papaver somniferum HOM05D007228 ORTHO05D009099 3.3e-148 529.6 788 42.1
SalBow1G3473 Salvia bowleyana HOM05D007228 ORTHO05D009099 8.2e-147 525.0 661 45.5
Nn3g16198 Nelumbo nucifera HOM05D007228 ORTHO05D009099 1.1e-146 524.6 648 47.5
ECA247G3190 Erigeron canadensis HOM05D007228 ORTHO05D009099 7.7e-145 518.5 580 49.1
Phvul.002G279800 Phaseolus vulgaris HOM05D007228 ORTHO05D009099 7.7e-145 518.5 648 47.2
Nitab4.5_0000976g0280 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.0e-144 518.1 673 46.7
Nitab4.5_0011883g0020 Nicotiana tabacum HOM05D007228 ORTHO05D009099 1.5e-143 514.2 672 45.7
MBI11_g17279_MAGBIO Magnolia biondii HOM05D007228 ORTHO05D009099 4.0e-141 506.1 570 48.4
Aa31LG3G18990 Aethionema arabicum HOM05D007228 ORTHO05D009099 5.7e-140 502.3 653 46.1
vmacro19097 Vaccinium macrocarpon HOM05D007228 ORTHO05D009099 1.8e-138 497.3 514 51.6
TPR.G12794 Trifolium pratense HOM05D007228 ORTHO05D009099 1.6e-137 494.2 530 49.4
Lsat_1_v5_gn_1_30460 Lactuca sativa HOM05D007228 ORTHO05D009099 1.7e-136 490.7 558 49.3
SGA_v2.0_scaffold515G52653 Striga asiatica HOM05D007228 ORTHO05D009099 1.6e-134 484.2 665 43.2
TAR629G1179 Trochodendron aralioides HOM05D007228 ORTHO05D009099 1.4e-133 481.1 475 55.4
CSS0045118 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.2e-132 478.0 476 52.3
CAN.G1008.38 Capsicum annuum HOM05D007228 ORTHO05D009099 2.0e-132 477.2 641 44.1
ClCG07G006120 Citrullus lanatus HOM05D007228 ORTHO05D009099 2.6e-132 476.9 667 43.5
Sed0011749 Sechium edule HOM05D007228 ORTHO05D009099 1.3e-131 474.6 657 43.1
HanXRQChr08g0229031 Helianthus annuus HOM05D007228 ORTHO05D009099 9.1e-130 468.4 537 48.0
Lj9C489T6 Lonicera japonica HOM05D007228 ORTHO05D009099 1.8e-122 444.1 632 44.0
MELO3C018355.2 Cucumis melo HOM05D007228 ORTHO05D009099 4.3e-119 433.0 563 43.3
CsaV3_5G013390 Cucumis sativus L. HOM05D007228 ORTHO05D009099 1.0e-117 428.3 707 38.9
Eucgr.E04338 Eucalyptus grandis HOM05D007228 ORTHO05D009099 5.7e-116 422.5 638 41.1
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 1.4e-114 417.9 614 41.9
PGR142G1350 Punica granatum HOM05D007228 ORTHO05D009099 3.3e-111 406.8 687 38.1
Os01g0103900 Oryza sativa ssp. japonica HOM05D007228 ORTHO05D009099 1.3e-104 384.8 508 41.9
EL10Ac5g11261 Beta vulgaris HOM05D007228 ORTHO05D009099 2.3e-104 384.0 662 38.7
Zm00001eb334150 Zea mays HOM05D007228 ORTHO05D009099 8.1e-102 375.6 700 34.6
Sc04g0000080 Simmondsia chinensis HOM05D007228 ORTHO05D009099 1.2e-92 345.1 498 41.4
Sc04g0000120 Simmondsia chinensis HOM05D007228 ORTHO05D009099 2.0e-92 344.4 498 41.4
AUR62036968 Chenopodium quinoa HOM05D007228 ORTHO05D009099 6.4e-91 339.3 655 36.0
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 4.7e-86 323.2 678 35.4
Hund02521 Selenicereus undatus HOM05D007228 ORTHO05D009099 1.1e-85 322.0 775 32.0
AUR62032199 Chenopodium quinoa HOM05D007228 ORTHO05D009099 8.4e-83 312.4 666 33.9
PGSC0003DMG400014227 Solanum tuberosum HOM05D007228 ORTHO05D009099 7.1e-74 282.7 351 47.0
unitig_747.g21316 Utricularia gibba HOM05D002839 ORTHO05D003349 3.0e-72 277.3 457 39.4
SEGI_11491 Sequoiadendron giganteum HOM05D007228 ORTHO05D009099 8.1e-70 269.2 439 37.6
CSS0001938 Camellia sinensis var. sinensis HOM05D007228 ORTHO05D009099 1.1e-63 248.8 283 48.4
GSVIVG01035283001 Vitis vinifera HOM05D007228 ORTHO05D009099 4.3e-63 246.9 284 52.1
Lalb_Chr12g0202641 Lupinus albus HOM05D007228 ORTHO05D009099 2.0e-60 238.0 281 48.0
Psat0s3642g0120 Pisum sativum HOM05D007228 ORTHO05D009099 2.9e-59 234.2 375 39.5
SMO119G0281 Selaginella moellendorffii HOM05D007228 ORTHO05D009099 3.7e-54 217.2 468 31.0
HPP92_021579 Vanilla planifolia HOM05D007228 ORTHO05D009099 1.5e-47 195.3 363 35.8
Psat3g128520 Pisum sativum HOM05D007228 ORTHO05D009099 3.7e-46 190.7 385 34.8
Lalb_Chr12g0202651 Lupinus albus HOM05D007228 ORTHO05D009099 1.4e-45 188.7 190 50.0
TPR.G21492 Trifolium pratense HOM05D007228 ORTHO05D009099 2.6e-39 167.9 216 45.8
AagrBONN_evm.TU.Sc2ySwM_344.3780 Anthoceros agrestis HOM05D007228 ORTHO05D009099 1.3e-35 155.6 251 35.9
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 2.1e-33 148.3 172 45.3
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.1e-31 142.5 155 46.5
MSTRG.9383 Avicennia marina HOM05D007228 ORTHO05D009099 4.1e-29 134.0 181 45.3
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 5.7e-23 113.6 102 51.0
Lalb_Chr12g0202661 Lupinus albus HOM05D007228 ORTHO05D009099 9.7e-23 112.8 143 47.6
AUR62009120 Chenopodium quinoa HOM05D007228 ORTHO05D009099 3.1e-21 107.8 470 26.4
CDE06G2808 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 1.2e-20 105.9 178 32.6
HanXRQChr08g0229021 Helianthus annuus HOM05D007228 ORTHO05D009099 3.5e-20 104.4 107 53.3
AL468U10020 Arabidopsis lyrata HOM05D007228 ORTHO05D009099 5.9e-20 103.6 84 59.5
CDE02G0692 Ceratophyllum demersum HOM05D007228 ORTHO05D009099 3.7e-14 84.3 96 42.7
Sp6g35490 Schrenkiella parvula HOM05D007228 ORTHO05D009099 1.6e-12 79.0 110 44.5
HPP92_021580 Vanilla planifolia HOM05D007228 ORTHO05D009099 9.8e-07 59.7 149 34.2
AL6G43550 Arabidopsis lyrata HOM05D001764 ORTHO05D079172 3.7e-06 57.8 99 33.3


User provided reference genes

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