Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 2.1e-163 578.9 291 100.0
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 5.5e-119 431.4 291 78.0
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 3.0e-117 425.6 290 73.8
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 1.9e-116 422.9 285 76.5
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 3.3e-116 422.2 286 73.8
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.8e-115 419.1 290 73.1
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 6.9e-114 414.5 290 71.7
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 2.0e-113 412.9 292 71.6
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.0e-112 410.6 289 71.6
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 6.5e-112 407.9 281 72.2
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 3.2e-111 405.6 289 70.9
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 1.2e-110 403.7 307 66.8
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 6.1e-110 401.4 291 69.1
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.8e-109 399.8 286 69.6
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 1.8e-109 399.8 287 70.7
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 3.0e-109 399.1 291 70.8
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 2.0e-108 396.4 281 69.8
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 2.0e-108 396.4 292 68.8
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.0e-108 396.4 281 71.9
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 5.7e-108 394.8 293 68.6
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 1.3e-107 393.7 285 69.5
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 6.3e-107 391.3 294 68.0
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 2.4e-106 389.4 286 69.2
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 2.4e-106 389.4 285 69.5
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 5.3e-106 388.3 286 69.9
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 6.9e-106 387.9 283 68.9
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 9.1e-106 387.5 288 69.1
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.5e-105 386.7 282 68.8
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 2.0e-105 386.3 284 69.0
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 4.5e-105 385.2 288 69.1
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 5.9e-105 384.8 283 68.9
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.7e-104 383.3 256 75.4
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.2e-104 382.9 284 69.7
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 2.2e-104 382.9 294 68.4
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 2.9e-104 382.5 281 67.3
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 3.8e-104 382.1 294 66.7
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 5.0e-104 381.7 282 68.4
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 1.9e-103 379.8 282 68.8
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 5.5e-103 378.3 282 68.4
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 9.4e-103 377.5 285 65.6
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 9.4e-103 377.5 285 66.3
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 1.2e-102 377.1 286 67.1
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.6e-102 376.7 288 68.8
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 2.1e-102 376.3 286 67.1
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 6.1e-102 374.8 285 66.3
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 6.1e-102 374.8 216 83.8
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.4e-101 373.6 253 77.5
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.5e-100 370.2 292 65.1
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.5e-100 370.2 266 72.6
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 2.0e-100 369.8 285 66.0
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.0e-100 369.8 283 66.4
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 5.7e-100 368.2 282 63.8
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 5.7e-100 368.2 259 69.9
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.3e-99 367.1 282 64.9
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.3e-99 367.1 282 64.9
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 2.2e-99 366.3 280 66.1
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 3.7e-99 365.5 288 67.0
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 4.8e-99 365.2 282 65.6
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 4.8e-99 365.2 282 66.0
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 1.4e-98 363.6 282 64.5
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 1.8e-98 363.2 282 65.6
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 2.4e-98 362.8 284 65.5
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.5e-97 360.1 285 64.9
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.0e-97 359.8 285 66.0
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 7.7e-97 357.8 313 60.4
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 1.3e-96 357.1 287 62.0
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.7e-96 356.7 282 63.8
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.7e-96 356.7 254 68.1
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 2.2e-96 356.3 250 70.4
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 3.8e-96 355.5 286 66.1
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 6.5e-96 354.8 288 66.3
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 6.5e-96 354.8 293 62.5
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 4.2e-95 352.1 278 65.5
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 1.6e-94 350.1 293 62.1
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.1e-94 349.7 284 62.3
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 8.0e-94 347.8 233 72.1
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 3.0e-93 345.9 224 71.9
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 6.7e-93 344.7 250 70.0
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.1e-92 344.0 217 77.0
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 1.1e-92 344.0 222 71.6
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 4.4e-92 342.0 221 71.0
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 4.8e-91 338.6 257 65.0
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.2e-91 337.8 252 69.8
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 1.1e-90 337.4 229 71.2
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 3.1e-90 335.9 269 63.9
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 7.0e-90 334.7 342 54.7
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 7.0e-90 334.7 265 62.3
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 2.0e-89 333.2 267 64.4
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 3.5e-89 332.4 291 67.0
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 3.5e-89 332.4 222 71.2
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.3e-88 330.5 259 64.1
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 3.8e-88 328.9 250 65.6
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 3.8e-88 328.9 250 65.6
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.5e-87 327.0 250 65.6
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.5e-87 327.0 250 65.6
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 1.5e-87 327.0 269 63.2
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 4.2e-87 325.5 225 68.9
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 8.0e-86 321.2 218 74.3
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 4.0e-85 318.9 263 63.1
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 5.2e-85 318.5 191 79.1
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 2.0e-84 316.6 318 55.3
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 9.7e-84 314.3 286 56.3
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 6.3e-83 311.6 327 53.2
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 2.7e-81 306.2 230 67.4
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 2.7e-81 306.2 337 51.0
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 8.0e-78 294.7 253 60.5
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 3.0e-77 292.7 169 81.7
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 6.8e-77 291.6 288 56.9
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 7.7e-73 278.1 275 55.3
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 2.2e-67 260.0 166 74.1
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.1e-66 257.7 282 51.8
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 2.7e-57 226.5 263 51.3
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 6.0e-57 225.3 262 44.3
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 8.6e-56 221.5 136 77.9
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 1.1e-55 221.1 210 51.0
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 7.3e-55 218.4 208 51.0
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.4e-53 214.2 156 67.9
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 3.4e-52 209.5 212 47.6
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 4.3e-47 192.6 137 69.3
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 1.4e-45 187.6 152 62.5
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 5.8e-44 182.2 200 47.5
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 3.7e-43 179.5 105 79.0
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 2.6e-36 156.8 130 62.3
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.9e-27 126.7 188 34.0
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 6.0e-25 119.0 137 51.8
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 2.3e-24 117.1 80 68.8
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.9e-23 114.0 80 66.2
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 1.3e-22 111.3 187 35.8
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 5.3e-21 105.9 81 59.3
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 9.9e-20 101.7 119 51.3
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.3e-19 101.3 83 60.2
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.4e-18 97.8 70 62.9
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 1.2e-17 94.7 95 52.6
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 1.4e-10 71.2 47 70.2
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 1.2e-09 68.2 40 75.0
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 2.7e-09 67.0 86 47.7
Thhalv10029279m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 3.3e-07 60.1 58 56.9
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 4.3e-07 59.7 34 85.3
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 9.6e-07 58.5 52 50.0


User provided reference genes

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