Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 6.0e-190 667.5 388 100.0
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 9.8e-148 527.3 392 82.1
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 6.0e-129 464.9 399 67.2
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 6.0e-129 464.9 398 65.8
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 4.9e-123 445.3 397 68.5
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 6.4e-123 444.9 402 71.6
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 1.1e-122 444.1 396 68.7
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 2.0e-116 423.3 405 61.2
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 1.2e-113 414.1 401 65.8
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 2.7e-113 412.9 411 63.5
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 7.8e-113 411.4 401 64.1
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 6.6e-112 408.3 397 66.0
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 5.6e-111 405.2 400 65.8
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 2.8e-110 402.9 397 65.5
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 3.6e-110 402.5 397 65.5
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 1.4e-109 400.6 406 65.5
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 3.1e-109 399.4 396 64.1
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.4e-106 389.8 387 64.1
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 1.2e-105 387.5 400 58.5
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 1.3e-104 384.0 417 62.1
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 3.0e-104 382.9 413 57.6
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 3.3e-103 379.4 405 59.8
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.5e-100 370.5 411 59.9
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 5.8e-100 368.6 440 57.3
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 7.6e-100 368.2 422 56.6
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 7.6e-100 368.2 417 58.3
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 9.9e-100 367.9 412 59.5
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 2.2e-99 366.7 404 63.1
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 1.1e-98 364.4 405 57.3
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 5.4e-98 362.1 418 61.0
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 6.0e-97 358.6 372 61.3
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 6.0e-97 358.6 415 58.8
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 1.7e-96 357.1 402 53.0
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 3.0e-96 356.3 420 56.9
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 2.8e-94 349.7 407 59.7
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.8e-93 347.1 407 57.2
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 7.6e-92 341.7 401 53.9
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 1.7e-91 340.5 403 53.8
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 1.9e-90 337.0 445 56.0
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.2e-90 336.3 400 56.8
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 7.1e-90 335.1 402 57.0
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 7.1e-90 335.1 400 56.8
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.2e-89 334.3 401 55.9
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 2.7e-89 333.2 428 54.9
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.7e-89 333.2 400 56.2
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 2.7e-89 333.2 423 55.6
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 1.0e-88 331.3 401 56.4
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 1.8e-88 330.5 403 53.8
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.8e-88 330.5 400 56.2
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 3.0e-88 329.7 414 52.9
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 1.1e-87 327.8 399 58.4
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 4.3e-87 325.9 408 53.9
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 9.6e-87 324.7 412 52.7
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 1.6e-86 323.9 407 54.1
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 1.6e-86 323.9 440 53.0
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 2.1e-86 323.6 336 62.5
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 2.1e-86 323.6 399 56.9
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 4.8e-86 322.4 413 54.2
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 1.8e-85 320.5 324 63.3
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 3.4e-84 316.2 428 52.8
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 5.8e-84 315.5 433 50.3
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 7.6e-84 315.1 416 52.4
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 7.6e-84 315.1 422 53.1
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 1.3e-83 314.3 416 54.3
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 2.9e-83 313.2 420 55.2
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 4.9e-83 312.4 458 49.1
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 8.4e-83 311.6 424 54.2
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 3.2e-82 309.7 411 51.1
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 5.5e-82 308.9 408 52.9
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 7.1e-82 308.5 428 51.2
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 3.5e-81 306.2 406 53.2
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 3.5e-81 306.2 406 52.7
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 4.6e-81 305.8 411 51.3
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 1.3e-80 304.3 414 53.1
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 5.1e-80 302.4 387 49.1
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 6.7e-80 302.0 343 59.8
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 6.7e-80 302.0 395 52.9
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 8.7e-80 301.6 432 50.2
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 2.5e-79 300.1 432 50.0
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 2.5e-79 300.1 412 50.0
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 3.3e-79 299.7 394 51.3
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 1.6e-78 297.4 466 47.6
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 2.1e-78 297.0 406 53.2
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 2.8e-78 296.6 454 47.8
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 2.8e-78 296.6 433 52.0
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 2.8e-78 296.6 418 51.9
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 2.8e-78 296.6 407 51.8
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 8.2e-78 295.0 407 50.9
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 9.0e-77 291.6 404 55.0
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 1.2e-76 291.2 374 56.1
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 2.0e-76 290.4 467 46.0
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 1.0e-75 288.1 453 49.7
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 1.3e-75 287.7 465 44.9
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 2.2e-75 287.0 398 49.2
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 2.2e-75 287.0 398 49.2
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 2.9e-75 286.6 307 58.3
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 4.9e-75 285.8 313 60.1
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 5.5e-74 282.3 445 48.3
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 2.3e-72 276.9 403 47.6
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 1.5e-71 274.2 417 48.2
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 3.3e-71 273.1 399 50.4
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 4.3e-71 272.7 452 47.1
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.1e-69 268.1 249 63.9
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 7.2e-66 255.4 180 75.6
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 9.4e-66 255.0 463 42.8
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 1.2e-65 254.6 460 42.0
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 1.4e-64 251.1 468 43.4
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 3.9e-64 249.6 341 54.8
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 1.5e-63 247.7 180 75.6
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 1.5e-63 247.7 411 44.3
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 2.0e-63 247.3 465 45.6
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 7.4e-63 245.4 180 75.0
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 7.4e-63 245.4 164 80.5
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 8.5e-59 231.9 463 45.8
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 4.7e-57 226.1 396 45.2
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 2.3e-56 223.8 403 44.7
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 3.0e-56 223.4 361 47.1
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 6.7e-56 222.2 171 71.9
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 3.8e-51 206.5 403 38.5
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 9.4e-50 201.8 405 44.2
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 3.6e-49 199.9 220 52.3
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 1.8e-48 197.6 145 73.1
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 1.1e-47 194.9 247 49.0
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 2.4e-45 187.2 181 59.7
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 2.9e-43 180.3 170 59.4
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 2.7e-41 173.7 166 60.8
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 3.7e-38 163.3 171 54.4
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 2.3e-32 144.1 126 62.7
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.9e-22 110.5 80 72.5
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.3e-19 101.7 88 64.8
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 3.9e-19 100.1 88 64.8
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 6.6e-19 99.4 117 47.0
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 7.3e-18 95.9 83 63.9
CSS0003747 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 2.1e-17 94.4 65 76.9
ECA238G1972 Erigeron canadensis HOM05D005186 ORTHO05D006278 6.8e-16 89.4 63 73.0
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 1.7e-14 84.7 172 37.8
A06p29100 Brassica napus HOM05D005186 ORTHO05D006278 1.4e-13 81.6 130 40.0
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 6.0e-12 76.3 62 67.7
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 3.0e-11 73.9 266 31.2
Nn3g18746 Nelumbo nucifera HOM05D005186 ORTHO05D006278 3.0e-11 73.9 66 57.6
FAN03G1572 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.3e-10 70.1 47 74.5
Sabra14G0043300 Salix brachista HOM05D005186 ORTHO05D006278 8.1e-09 65.9 59 62.7
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 1.4e-08 65.1 131 35.9
Mapoly0035s0113 Marchantia polymorpha HOM05D006269 ORTHO05D001487 2.3e-08 64.3 110 36.4
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 4.0e-08 63.5 126 29.4
arahy.Tifrunner.gnm1.ann1.II6FYR Arachis hypogaea HOM05D006269 ORTHO05D001487 1.5e-07 61.6 141 29.8
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 5.8e-07 59.7 142 32.4
Atru.chr1.1456 Acer truncatum HOM05D005186 ORTHO05D006278 7.5e-07 59.3 63 54.0
Cpa.g.sc184.9 Carica papaya HOM05D006269 ORTHO05D001487 7.5e-07 59.3 145 30.3
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 7.5e-07 59.3 99 37.4
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 7.5e-07 59.3 99 41.4
Lsat_1_v5_gn_6_68201 Lactuca sativa HOM05D005186 ORTHO05D006278 9.8e-07 58.9 34 85.3
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.3e-06 58.5 100 39.0
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 1.3e-06 58.5 127 32.3
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 1.7e-06 58.2 128 32.0
Pp3c13_3400 Physcomitrium patens HOM05D006269 ORTHO05D001487 1.7e-06 58.2 142 26.8
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 2.2e-06 57.8 99 36.4
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 2.2e-06 57.8 99 36.4
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 2.2e-06 57.8 129 31.8
SalBow5G2113 Salvia bowleyana HOM05D006269 ORTHO05D001487 2.2e-06 57.8 124 28.2
SEGI_27071 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.2e-06 57.8 105 32.4
SEGI_37331 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.2e-06 57.8 115 29.6
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 2.9e-06 57.4 99 40.4
vmacro13212 Vaccinium macrocarpon HOM05D006269 ORTHO05D001487 3.7e-06 57.0 213 23.5
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 3.7e-06 57.0 113 39.8
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 4.9e-06 56.6 99 36.4
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 6.4e-06 56.2 99 37.4
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 6.4e-06 56.2 113 35.4
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 6.4e-06 56.2 100 38.0
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 6.4e-06 56.2 99 34.3
SEGI_30715 Sequoiadendron giganteum HOM05D014410 ORTHO05D001487 6.4e-06 56.2 108 33.3
arahy.Tifrunner.gnm1.ann1.YSVF0U Arachis hypogaea HOM05D006269 ORTHO05D001487 8.3e-06 55.8 126 27.8
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 8.3e-06 55.8 152 31.6


User provided reference genes

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