Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 3.6e-58 228.0 113 100.0
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 2.1e-26 122.5 89 69.7
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.7e-26 121.3 99 61.6
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.7e-26 121.3 99 61.6
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 4.7e-26 121.3 99 61.6
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 8.0e-26 120.6 95 64.2
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 4.0e-25 118.2 95 64.2
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 1.2e-24 116.7 98 59.2
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 1.5e-24 116.3 100 60.0
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 3.4e-24 115.2 96 62.5
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 3.4e-24 115.2 95 63.2
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 9.8e-24 113.6 96 62.5
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.3e-23 113.2 97 60.8
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 1.4e-22 109.8 97 56.7
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 9.2e-22 107.1 94 53.2
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.2e-21 106.7 99 55.6
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.2e-21 106.7 98 62.2
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.2e-21 106.7 98 62.2
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 1.2e-21 106.7 95 52.6
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 1.6e-21 106.3 101 55.4
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 2.0e-21 105.9 97 54.6
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 4.6e-21 104.8 66 71.2
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 5.9e-21 104.4 98 60.2
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 7.8e-21 104.0 98 57.1
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 1.0e-20 103.6 99 53.5
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 1.3e-20 103.2 96 53.1
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.7e-20 102.8 96 54.2
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 2.3e-20 102.4 109 48.6
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 5.0e-20 101.3 84 56.0
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 6.6e-20 100.9 83 55.4
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 6.6e-20 100.9 98 52.0
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 8.6e-20 100.5 96 55.2
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 8.6e-20 100.5 97 50.5
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 1.1e-19 100.1 97 50.5
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.1e-19 100.1 92 57.6
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 1.1e-19 100.1 96 53.1
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 3.3e-19 98.6 87 54.0
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 3.3e-19 98.6 95 53.7
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 4.3e-19 98.2 81 53.1
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 5.6e-19 97.8 95 53.7
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 5.6e-19 97.8 100 48.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 5.6e-19 97.8 100 48.0
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 5.6e-19 97.8 86 55.8
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 7.3e-19 97.4 99 51.5
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 7.3e-19 97.4 88 52.3
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 9.5e-19 97.1 103 50.5
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 1.6e-18 96.3 99 51.5
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 1.6e-18 96.3 92 54.3
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 1.6e-18 96.3 94 53.2
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.8e-18 95.5 99 50.5
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 4.7e-18 94.7 93 53.8
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 4.7e-18 94.7 96 52.1
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 4.7e-18 94.7 88 55.7
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 8.0e-18 94.0 83 55.4
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 1.4e-17 93.2 97 52.6
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 1.8e-17 92.8 83 55.4
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 2.3e-17 92.4 81 54.3
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 5.2e-17 91.3 80 53.8
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 8.9e-17 90.5 89 47.2
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 8.9e-17 90.5 62 62.9
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 8.9e-17 90.5 62 62.9
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 8.9e-17 90.5 65 58.5
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 8.9e-17 90.5 65 58.5
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 1.2e-16 90.1 90 54.4
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.5e-16 89.7 94 46.8
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 1.5e-16 89.7 101 46.5
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 2.0e-16 89.4 83 53.0
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 3.4e-16 88.6 64 60.9
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 3.4e-16 88.6 83 48.2
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 3.4e-16 88.6 94 45.7
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 4.4e-16 88.2 94 47.9
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 4.4e-16 88.2 94 50.0
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 5.8e-16 87.8 96 42.7
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 7.5e-16 87.4 98 46.9
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 9.8e-16 87.0 97 47.4
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 2.2e-15 85.9 81 51.9
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 2.2e-15 85.9 78 51.3
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 2.2e-15 85.9 97 45.4
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.9e-15 85.5 103 43.7
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 4.9e-15 84.7 88 44.3
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 4.9e-15 84.7 97 47.4
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 8.3e-15 84.0 85 47.1
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.1e-14 83.6 51 64.7
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 1.1e-14 83.6 84 47.6
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 1.9e-14 82.8 95 48.4
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 1.9e-14 82.8 64 57.8
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 1.9e-14 82.8 82 48.8
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.9e-14 82.8 97 47.4
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 3.2e-14 82.0 88 46.6
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 3.2e-14 82.0 89 43.8
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 5.4e-14 81.3 98 43.9
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 5.4e-14 81.3 80 48.8
AL8G38860 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 7.0e-14 80.9 92 45.7
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 7.0e-14 80.9 95 40.0
AT5G62080 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 9.2e-14 80.5 92 45.7
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 9.2e-14 80.5 95 45.3
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 9.2e-14 80.5 95 45.3
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 9.2e-14 80.5 88 45.5
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 9.2e-14 80.5 95 45.3
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 9.2e-14 80.5 88 45.5
Thhalv10005193m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 9.2e-14 80.5 94 48.9
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 9.2e-14 80.5 83 50.6
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 1.2e-13 80.1 92 45.7
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-13 80.1 64 54.7
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 1.2e-13 80.1 94 45.7
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 1.6e-13 79.7 82 50.0
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 2.0e-13 79.3 95 45.3
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 2.0e-13 79.3 100 47.0
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 2.0e-13 79.3 77 48.1
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 2.7e-13 79.0 94 44.7
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 2.7e-13 79.0 64 51.6
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 6.0e-13 77.8 62 54.8
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.3e-12 76.6 93 41.9
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.3e-12 76.6 93 44.1
CARHR275870 Cardamine hirsuta HOM05D005649 ORTHO05D006837 2.3e-12 75.9 90 43.3
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 3.9e-12 75.1 81 45.7
Carub.0008s2276 Capsella rubella HOM05D005649 ORTHO05D006837 6.6e-12 74.3 92 44.6
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.5e-11 73.2 92 40.2
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 1.5e-11 73.2 85 45.9
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 5.6e-11 71.2 82 43.9
Sp6g35660 Schrenkiella parvula HOM05D005649 ORTHO05D006837 7.3e-11 70.9 95 35.8
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 9.5e-11 70.5 93 39.8
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 1.2e-10 70.1 90 37.8
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 1.6e-10 69.7 85 45.9
Thhalv10015126m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.1e-10 69.3 94 38.3
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 3.6e-10 68.6 67 43.3
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 6.2e-10 67.8 61 49.2
AT5G07230 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 8.1e-10 67.4 92 38.0
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 8.1e-10 67.4 82 40.2
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 8.1e-10 67.4 82 40.2
Aa31LG2G14360 Aethionema arabicum HOM05D005649 ORTHO05D006837 1.4e-09 66.6 81 39.5
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.4e-09 66.6 82 39.0
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 3.1e-09 65.5 82 40.2
Zm00001eb198610 Zea mays HOM05D005649 ORTHO05D006837 3.1e-09 65.5 61 47.5
Aa31LG2G14310 Aethionema arabicum HOM05D005649 ORTHO05D006837 9.9e-08 60.5 86 38.4


User provided reference genes

Program Settings