Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 2.1e-261 905.2 470 100.0
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 2.6e-187 659.1 472 75.8
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 3.1e-172 609.0 477 69.2
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 4.9e-170 601.7 471 68.2
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 3.7e-165 585.5 473 66.0
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 4.9e-162 575.1 477 63.3
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 1.8e-156 556.6 475 63.2
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 2.2e-154 549.7 472 63.8
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 9.4e-153 544.3 472 61.0
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 1.1e-148 530.8 473 62.6
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 6.9e-148 528.1 483 59.4
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 2.6e-147 526.2 473 60.0
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 5.9e-147 525.0 477 59.5
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 3.8e-146 522.3 475 59.6
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 1.3e-141 507.3 474 56.1
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 3.7e-141 505.8 475 57.1
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 1.2e-139 500.7 474 56.3
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.2e-139 500.7 470 58.3
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 2.6e-139 499.6 471 57.7
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 2.6e-139 499.6 475 54.9
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 4.5e-139 498.8 476 55.3
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 5.9e-139 498.4 470 58.1
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 2.9e-138 496.1 470 57.9
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 2.9e-138 496.1 471 58.0
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 2.9e-138 496.1 474 58.0
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 8.5e-138 494.6 475 55.8
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 3.2e-137 492.7 471 54.8
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 5.5e-137 491.9 474 55.1
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 7.2e-137 491.5 473 56.7
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 9.4e-137 491.1 474 53.8
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 2.7e-136 489.6 472 55.1
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 4.7e-136 488.8 475 55.6
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 1.3e-133 480.7 474 55.1
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 1.3e-133 480.7 474 55.1
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 1.3e-133 480.7 474 55.1
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 1.7e-133 480.3 467 53.3
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 2.8e-133 479.6 468 57.7
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 6.3e-133 478.4 474 55.5
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 8.2e-133 478.0 474 55.1
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 1.1e-132 477.6 474 54.0
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 3.1e-132 476.1 472 53.0
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 9.1e-132 474.6 474 55.1
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 3.5e-131 472.6 472 53.0
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 5.9e-131 471.9 471 55.6
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 1.5e-129 467.2 474 55.3
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 9.4e-129 464.5 477 54.5
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.1e-128 461.8 479 54.1
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 6.7e-127 458.4 468 53.0
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 8.8e-127 458.0 479 53.7
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 3.3e-126 456.1 478 54.2
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 7.5e-126 454.9 470 54.5
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 1.7e-125 453.8 477 51.4
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 2.8e-125 453.0 467 52.0
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 3.1e-124 449.5 475 53.5
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 4.1e-124 449.1 472 53.0
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 9.1e-124 448.0 467 51.6
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 1.6e-123 447.2 472 51.9
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 1.6e-123 447.2 476 51.3
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 3.5e-123 446.0 469 52.5
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 3.5e-123 446.0 468 51.7
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 1.7e-122 443.7 480 51.7
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 1.5e-121 440.7 473 52.4
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 1.9e-121 440.3 467 50.3
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 1.9e-121 440.3 478 51.3
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 4.2e-121 439.1 446 54.3
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 4.7e-120 435.6 418 53.8
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 4.4e-118 429.1 477 48.8
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 4.8e-117 425.6 361 62.3
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 3.1e-116 422.9 442 54.5
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 4.1e-116 422.5 468 50.2
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 9.1e-116 421.4 466 48.9
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 4.5e-115 419.1 464 51.9
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 1.5e-113 414.1 409 54.3
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 1.9e-113 413.7 473 49.3
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 2.5e-113 413.3 468 48.1
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 3.3e-113 412.9 417 52.5
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 7.2e-113 411.8 380 58.2
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 1.2e-110 404.4 434 53.0
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 7.5e-110 401.7 430 53.0
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 1.7e-109 400.6 432 52.8
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 5.9e-107 392.1 457 50.1
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 1.2e-104 384.4 414 52.2
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 2.0e-102 377.1 474 46.0
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 9.8e-102 374.8 411 49.6
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 4.9e-101 372.5 410 49.5
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.0e-98 364.8 363 56.7
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 8.9e-95 351.7 475 47.6
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 1.1e-87 328.2 444 44.1
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 3.4e-86 323.2 263 66.9
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 1.3e-85 321.2 598 36.0
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 6.8e-79 298.9 239 61.5
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.9e-76 290.8 240 60.4
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.9e-69 266.9 459 41.6
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 3.8e-69 266.5 340 47.4
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 3.0e-66 256.9 531 34.5
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 6.2e-64 249.2 259 48.3
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 1.1e-49 201.8 143 69.9
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 5.7e-41 172.9 471 31.4
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 1.3e-40 171.8 320 35.6
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 3.4e-38 163.7 445 33.5
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.7e-37 161.4 473 26.6
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 1.7e-32 144.8 532 24.6
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 4.8e-32 143.3 123 58.5
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 1.9e-28 131.3 258 33.7
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 2.5e-28 131.0 445 29.4
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 3.2e-28 130.6 181 42.5
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 1.2e-27 128.6 178 46.6
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 4.4e-25 120.2 122 59.0
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 2.4e-23 114.4 258 31.8
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 2.7e-19 100.9 146 44.5
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 5.2e-18 96.7 111 53.2
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 2.2e-16 91.3 151 41.1
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 1.1e-15 89.0 98 51.0
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 1.6e-11 75.1 119 32.8
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 4.5e-06 57.0 130 26.9


User provided reference genes

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