Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 4.5e-297 1023.8 530 100.0
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.3e-190 670.2 528 66.9
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.0e-187 660.6 530 67.4
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 1.4e-184 650.2 553 64.0
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 2.3e-184 649.4 530 64.0
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 2.6e-183 646.0 554 63.9
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 5.0e-179 631.7 553 61.1
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 2.8e-177 625.9 529 64.7
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.1e-177 624.8 529 63.9
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.4e-176 623.6 529 64.5
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 6.8e-176 621.3 530 61.1
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 1.1e-173 614.0 532 62.8
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 5.4e-173 611.7 532 60.9
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 4.3e-170 602.1 528 60.8
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 1.2e-169 600.5 530 59.4
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 4.7e-169 598.6 530 60.2
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.9e-166 589.3 536 59.9
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 2.4e-165 586.3 536 60.6
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 6.0e-164 581.6 531 60.6
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 7.8e-164 581.3 531 60.6
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 1.3e-163 580.5 531 60.3
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 5.6e-162 575.1 533 58.5
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 3.6e-161 572.4 528 59.3
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.0e-155 554.3 562 55.2
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 1.7e-155 553.5 537 57.4
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 2.8e-153 546.2 547 55.2
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 2.3e-152 543.1 533 56.1
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.5e-151 540.4 514 56.8
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 7.6e-151 538.1 535 55.5
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 9.9e-151 537.7 531 55.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 2.9e-150 536.2 528 54.2
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 5.4e-149 531.9 533 55.2
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 4.6e-148 528.9 519 58.4
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.3e-147 526.6 543 52.9
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.9e-146 523.5 531 54.4
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 2.1e-145 520.0 534 54.3
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 8.1e-145 518.1 536 52.2
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 1.4e-144 517.3 531 54.0
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 3.1e-144 516.2 535 53.8
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 4.0e-144 515.8 538 51.9
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 8.9e-144 514.6 532 54.9
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 4.4e-143 512.3 530 52.8
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 3.2e-141 506.1 532 52.6
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 5.4e-141 505.4 539 51.2
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 5.4e-141 505.4 536 53.2
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 1.2e-140 504.2 532 52.3
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 4.6e-140 502.3 544 52.2
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 7.8e-140 501.5 537 53.1
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.0e-139 501.1 539 50.5
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 1.3e-139 500.7 550 50.7
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 2.3e-139 500.0 531 53.1
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 6.6e-139 498.4 538 51.1
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.7e-139 498.0 548 51.8
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.1e-138 497.7 540 49.8
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 3.3e-138 496.1 503 55.7
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 9.6e-138 494.6 532 49.4
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 9.6e-138 494.6 530 54.2
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.3e-137 494.2 440 60.0
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.1e-137 493.4 551 51.4
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 3.6e-137 492.7 549 50.5
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 6.2e-137 491.9 547 50.8
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 6.2e-137 491.9 547 50.8
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 4.0e-136 489.2 534 52.1
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 9.0e-136 488.0 539 49.7
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 4.5e-135 485.7 537 51.4
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 3.8e-134 482.6 610 46.6
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 4.9e-134 482.3 564 49.5
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 4.9e-134 482.3 529 51.4
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 1.2e-132 477.6 539 48.2
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 1.2e-132 477.6 539 48.2
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 2.7e-132 476.5 539 48.1
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 3.0e-131 473.0 534 50.2
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 6.7e-131 471.9 539 48.8
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 8.7e-131 471.5 535 48.6
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 1.3e-129 467.6 541 48.8
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 1.3e-129 467.6 536 50.0
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 1.6e-129 467.2 534 49.4
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 2.1e-129 466.8 540 49.4
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 6.2e-129 465.3 535 49.7
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 8.1e-129 464.9 534 49.8
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 8.1e-129 464.9 538 49.1
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 2.4e-128 463.4 532 48.7
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.5e-127 460.7 531 48.6
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 2.0e-127 460.3 539 47.1
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 3.4e-127 459.5 539 46.9
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 3.4e-127 459.5 532 48.5
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 9.9e-127 458.0 534 49.1
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 2.4e-125 453.4 528 48.9
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 7.1e-125 451.8 553 47.4
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 9.3e-125 451.4 555 46.8
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 9.3e-125 451.4 537 47.5
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 1.1e-122 444.5 676 43.9
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 5.6e-122 442.2 531 46.0
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 9.6e-122 441.4 527 47.8
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 2.1e-121 440.3 440 55.2
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 2.8e-121 439.9 536 46.8
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.1e-120 436.4 537 47.1
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 3.2e-117 426.4 491 50.9
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 2.3e-115 420.2 531 46.1
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 1.4e-112 411.0 548 46.0
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.8e-112 410.6 510 46.9
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.2e-111 407.9 529 45.4
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 3.2e-109 399.8 421 52.3
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 3.6e-108 396.4 384 54.7
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 1.8e-107 394.0 529 43.5
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 1.5e-106 391.0 545 43.7
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 7.4e-106 388.7 535 43.2
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.2e-103 381.3 384 53.4
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 3.3e-98 363.2 521 42.0
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 6.1e-92 342.4 546 41.2
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 6.7e-91 339.0 564 36.7
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 5.7e-90 335.9 333 54.4
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.1e-88 331.6 463 44.5
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.2e-87 328.2 555 37.5
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 3.5e-87 326.6 560 37.1
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 1.3e-86 324.7 279 63.4
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 1.7e-81 307.8 535 38.5
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 2.2e-81 307.4 535 37.8
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 5.0e-78 296.2 404 47.0
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 3.7e-73 280.0 350 46.9
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 1.3e-70 271.6 279 54.8
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 6.1e-68 262.7 272 53.7
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 5.2e-67 259.6 353 46.5
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 1.0e-62 245.4 217 59.0
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.0e-59 233.4 445 36.0
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 6.8e-59 232.6 494 34.8
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.5e-58 231.5 450 35.8
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 4.9e-57 226.5 267 50.6
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 2.1e-47 194.5 296 41.6
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 4.0e-43 180.3 145 61.4
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 3.4e-42 177.2 168 50.6
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 2.2e-41 174.5 378 34.9
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 7.3e-37 159.5 155 52.9
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 1.7e-33 148.3 153 46.4
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 3.8e-33 147.1 153 47.1
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 7.1e-32 142.9 247 37.7
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 4.6e-31 140.2 148 45.9
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 5.1e-30 136.7 150 52.0
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 6.6e-30 136.3 214 38.8
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 2.8e-28 131.0 175 45.1
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 2.0e-26 124.8 659 24.1
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 5.8e-26 123.2 185 38.9
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 2.2e-25 121.3 544 23.5
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 9.6e-21 105.9 189 31.7
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 1.5e-18 98.6 137 40.9
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.0e-18 98.2 284 32.0
HanXRQChr06g0163721 Helianthus annuus HOM05D004671 ORTHO05D005638 3.2e-08 64.3 80 47.5
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 4.2e-08 63.9 206 29.1
CAN.G432.4 Capsicum annuum HOM05D002050 ORTHO05D001949 1.0e-06 59.3 48 56.2
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 1.8e-06 58.5 99 30.3


User provided reference genes

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