Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 2.1e-25 118.2 61 100.0
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 8.5e-22 106.3 61 91.8
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 4.6e-20 100.5 58 84.5
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 3.9e-19 97.4 58 84.5
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 1.9e-18 95.1 58 79.3
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 2.5e-18 94.7 56 78.6
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 5.7e-18 93.6 58 81.0
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 1.3e-17 92.4 60 73.3
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 1.6e-17 92.0 60 75.0
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 3.7e-17 90.9 60 76.7
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 4.8e-17 90.5 60 73.3
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 4.8e-17 90.5 60 73.3
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 6.3e-17 90.1 61 75.4
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 6.3e-17 90.1 60 75.0
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 8.2e-17 89.7 60 75.0
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 8.2e-17 89.7 59 78.0
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 1.1e-16 89.4 62 77.4
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 1.8e-16 88.6 60 75.0
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 2.4e-16 88.2 60 71.7
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 2.4e-16 88.2 61 77.0
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 3.1e-16 87.8 50 84.0
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 3.1e-16 87.8 61 77.0
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 5.3e-16 87.0 55 74.5
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 6.9e-16 86.7 58 75.9
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 9.0e-16 86.3 60 70.0
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 9.0e-16 86.3 61 72.1
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 1.2e-15 85.9 65 75.4
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 1.2e-15 85.9 59 76.3
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 1.2e-15 85.9 53 81.1
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 1.5e-15 85.5 58 72.4
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 1.5e-15 85.5 56 76.8
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 2.0e-15 85.1 55 78.2
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 2.0e-15 85.1 59 69.5
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 2.0e-15 85.1 58 74.1
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 7.7e-15 83.2 60 73.3
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 1.0e-14 82.8 51 78.4
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 1.0e-14 82.8 54 81.5
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 1.3e-14 82.4 60 73.3
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 1.3e-14 82.4 45 88.9
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 3.8e-14 80.9 60 71.7
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 3.8e-14 80.9 53 79.2
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 4.2e-13 77.4 56 66.1
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 2.1e-12 75.1 47 76.6
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 2.7e-12 74.7 54 63.0
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 4.6e-12 73.9 54 63.0
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 7.9e-12 73.2 42 78.6
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 1.0e-11 72.8 42 78.6
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 1.4e-11 72.4 44 79.5
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 1.8e-11 72.0 55 61.8
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 3.0e-11 71.2 55 63.6
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 3.9e-11 70.9 58 58.6
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 1.1e-10 69.3 59 61.0
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 2.0e-10 68.6 57 68.4
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 2.0e-10 68.6 61 59.0
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 2.0e-10 68.6 61 59.0
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 5.7e-10 67.0 50 66.0
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 5.7e-10 67.0 61 59.0
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 7.4e-10 66.6 53 66.0
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 4.1e-08 60.8 36 75.0
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 5.3e-08 60.5 49 59.2
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 1.5e-07 58.9 43 65.1
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 1.5e-07 58.9 47 57.4
Pp3c4_4750 Physcomitrium patens HOM05D008240 ORTHO05D010333 7.7e-07 56.6 44 65.9
Mapoly0108s0016 Marchantia polymorpha HOM05D008240 ORTHO05D010333 2.2e-06 55.1 45 57.8
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 2.9e-06 54.7 33 78.8
Sabra06G0129100 Salix brachista HOM05D008240 ORTHO05D010333 6.5e-06 53.5 44 68.2
Sabra12G0001400 Salix brachista HOM05D008240 ORTHO05D010333 6.5e-06 53.5 44 68.2


User provided reference genes

Program Settings