Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G023400 Manihot esculenta HOM05D006494 ORTHO05D007787 5.4e-145 517.7 269 100.0
Manes.06G151500 Manihot esculenta HOM05D006494 ORTHO05D007787 3.9e-71 272.3 231 68.8
Ciclev10005709m.g Citrus clementina HOM05D006494 ORTHO05D007787 8.5e-50 201.4 228 50.4
QL09p013118 Quercus lobata HOM05D006494 ORTHO05D007787 8.8e-47 191.4 225 52.4
TWI23G1164 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 1.2e-46 191.0 233 53.2
TWI39G0535 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 5.7e-46 188.7 237 51.5
Thecc.04G169800 Theobroma cacao HOM05D006494 ORTHO05D007787 9.7e-46 188.0 232 52.2
Haze_00032 Corylus avellana HOM05D006494 ORTHO05D007787 2.2e-45 186.8 241 52.3
Cfa016278 Carpinus fangiana HOM05D006494 ORTHO05D007787 4.8e-45 185.7 240 52.1
Duzib268G1872 Durio zibethinus HOM05D006494 ORTHO05D007787 4.5e-43 179.1 233 50.2
Gohir.A02G091800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.3e-42 177.6 230 49.6
Duzib151G1204 Durio zibethinus HOM05D006494 ORTHO05D007787 2.5e-41 173.3 232 49.6
Gohir.D02G108900 Gossypium hirsutum HOM05D006494 ORTHO05D007787 2.1e-40 170.2 231 48.9
TWI39G0536 Tripterygium wilfordii HOM05D006494 ORTHO05D007787 6.1e-40 168.7 234 48.7
Gorai.005G124800 Gossypium raimondii HOM05D006494 ORTHO05D007787 1.4e-39 167.5 229 48.9
CiPaw.05G263300 Carya illinoinensis HOM05D006494 ORTHO05D007787 5.2e-39 165.6 216 51.4
Gohir.A10G141700 Gossypium hirsutum HOM05D006494 ORTHO05D007787 1.5e-38 164.1 239 46.4
Gohir.D10G124800 Gossypium hirsutum HOM05D006494 ORTHO05D007787 8.3e-37 158.3 239 44.4
Gorai.011G137900 Gossypium raimondii HOM05D006494 ORTHO05D007787 1.1e-36 157.9 239 44.8
Ciclev10030388m.g Citrus clementina HOM05D006494 ORTHO05D007787 2.4e-36 156.8 236 45.8
Eucgr.K00289 Eucalyptus grandis HOM05D006494 ORTHO05D007787 3.5e-35 152.9 228 46.5
Cpa.g.sc107.95 Carica papaya HOM05D006494 ORTHO05D007787 2.3e-34 150.2 233 44.6
Thecc.03G182400 Theobroma cacao HOM05D006494 ORTHO05D007787 3.8e-34 149.4 234 45.3
COL.COLO4_28030 Corchorus olitorius HOM05D006494 ORTHO05D007787 6.5e-34 148.7 229 45.0
PGR142G1234 Punica granatum HOM05D006494 ORTHO05D007787 1.1e-33 147.9 241 45.6
Dinv28397 Davidia involucrata HOM05D006494 ORTHO05D007787 6.1e-32 142.1 228 43.0
Prupe.7G058200 Prunus persica HOM05D006494 ORTHO05D007787 1.4e-31 141.0 203 48.8
Actinidia34147 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.0e-30 137.1 213 45.1
Actinidia20864 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.6e-30 136.7 211 43.6
Hma1.2p1_0327F.1_g126290 Hydrangea macrophylla HOM05D006494 ORTHO05D007787 8.3e-29 131.7 239 40.2
COL.COLO4_10079 Corchorus olitorius HOM05D006494 ORTHO05D007787 1.1e-28 131.3 230 44.3
MD07G1041300 Malus domestica HOM05D006494 ORTHO05D007787 1.4e-28 131.0 236 42.8
Actinidia08572 Actinidia chinensis HOM05D006494 ORTHO05D007787 7.0e-28 128.6 217 41.0
Potri.017G113501 Populus trichocarpa HOM05D006494 ORTHO05D007787 4.5e-27 125.9 223 40.4
vmacro06639 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 4.5e-27 125.9 224 43.8
Rhsim09G0199800 Rhododendron simsii HOM05D006494 ORTHO05D007787 5.9e-27 125.6 232 39.2
Rhsim09G0200100 Rhododendron simsii HOM05D006494 ORTHO05D007787 1.5e-25 120.9 202 40.6
vmacro09820 Vaccinium macrocarpon HOM05D006494 ORTHO05D007787 3.6e-24 116.3 233 36.9
MD14G1075900 Malus domestica HOM05D006494 ORTHO05D007787 6.1e-24 115.5 233 37.3
Sopen03g004010 Solanum pennellii HOM05D006494 ORTHO05D007787 5.2e-23 112.5 241 39.8
CSS0049923 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 8.9e-23 111.7 184 41.8
SHI13763 Sapria himalayana HOM05D000481 ORTHO05D003804 2.0e-22 110.5 206 41.7
MD12G1079700 Malus domestica HOM05D006494 ORTHO05D007787 3.4e-22 109.8 241 36.1
Potri.004G101600 Populus trichocarpa HOM05D006494 ORTHO05D007787 5.7e-22 109.0 219 39.3
PGSC0003DMG400010122 Solanum tuberosum HOM05D006494 ORTHO05D007787 1.3e-21 107.8 221 38.5
MSTRG.8473 Avicennia marina HOM05D006494 ORTHO05D007787 3.7e-21 106.3 215 37.7
TAR629G2733 Trochodendron aralioides HOM05D006494 ORTHO05D007787 6.4e-21 105.5 227 37.4
CsaV3_3G017370 Cucumis sativus L. HOM05D006494 ORTHO05D007787 1.4e-20 104.4 218 38.5
Nitab4.5_0000084g0320 Nicotiana tabacum HOM05D006494 ORTHO05D007787 1.4e-20 104.4 216 35.6
Nn6g33336 Nelumbo nucifera HOM05D006494 ORTHO05D007787 1.8e-20 104.0 224 40.6
Sabra04G0078700 Salix brachista HOM05D006494 ORTHO05D007787 1.8e-20 104.0 229 37.6
Sed0015630 Sechium edule HOM05D006494 ORTHO05D007787 9.2e-20 101.7 233 38.6
Solyc03g025160.4 Solanum lycopersicum HOM05D006494 ORTHO05D007787 1.6e-19 100.9 169 40.2
ClCG05G008270 Citrullus lanatus HOM05D006494 ORTHO05D007787 3.5e-19 99.8 235 37.0
Prupe.7G043900 Prunus persica HOM05D006494 ORTHO05D007787 4.6e-19 99.4 260 35.0
Actinidia31832 Actinidia chinensis HOM05D006494 ORTHO05D007787 1.0e-18 98.2 168 42.9
MELO3C018639.2 Cucumis melo HOM05D006494 ORTHO05D007787 3.9e-18 96.3 241 36.1
DCAR_020265 Daucus carota HOM05D006494 ORTHO05D007787 5.0e-18 95.9 239 38.9
Migut.F01093 Erythranthe guttata HOM05D006494 ORTHO05D007787 1.5e-17 94.4 214 36.4
Phvul.007G073600 Phaseolus vulgaris HOM05D006494 ORTHO05D007787 1.6e-16 90.9 225 33.8
VMungo0720G0554 Vigna mungo HOM05D006494 ORTHO05D007787 1.6e-16 90.9 227 35.7
TPR.G26961 Trifolium pratense HOM05D006494 ORTHO05D007787 1.1e-15 88.2 229 33.2
RcHm_v2.0_Chr3g0482771 Rosa chinensis HOM05D006494 ORTHO05D007787 1.4e-15 87.8 237 35.0
Ca_10732_v3 Cicer arietinum L. HOM05D006494 ORTHO05D007787 2.3e-15 87.0 235 32.8
Cc02_g02520 Coffea canephora HOM05D006494 ORTHO05D007787 3.1e-15 86.7 184 37.5
RcHm_v2.0_Chr3g0482351 Rosa chinensis HOM05D006494 ORTHO05D007787 5.2e-15 85.9 217 36.4
Migut.F00309 Erythranthe guttata HOM05D006494 ORTHO05D007787 6.8e-15 85.5 216 32.4
Nitab4.5_0000572g0070 Nicotiana tabacum HOM05D006494 ORTHO05D007787 1.2e-14 84.7 238 32.4
Lj5g0022841 Lotus japonicus HOM05D006494 ORTHO05D007787 1.5e-14 84.3 236 33.5
arahy.Tifrunner.gnm1.ann1.HAQV4X Arachis hypogaea HOM05D006494 ORTHO05D007787 2.0e-14 84.0 228 34.2
SalBow2G1868 Salvia bowleyana HOM05D006494 ORTHO05D007787 4.4e-14 82.8 204 36.3
SalBow2G2185 Salvia bowleyana HOM05D006494 ORTHO05D007787 4.4e-14 82.8 204 36.3
arahy.Tifrunner.gnm1.ann1.J3K5XQ Arachis hypogaea HOM05D006494 ORTHO05D007787 9.8e-14 81.6 228 33.8
ECA232G1863 Erigeron canadensis HOM05D006494 ORTHO05D007787 1.3e-13 81.3 229 34.1
ECA232G4003 Erigeron canadensis HOM05D006494 ORTHO05D007787 1.7e-13 80.9 201 37.3
PGSC0003DMG400029922 Solanum tuberosum HOM05D006494 ORTHO05D007787 2.9e-13 80.1 248 31.0
Lalb_Chr02g0144041 Lupinus albus HOM05D006494 ORTHO05D007787 8.3e-13 78.6 225 35.1
Glyma.10G231900 Glycine max HOM05D006494 ORTHO05D007787 1.9e-12 77.4 226 33.2
Lalb_Chr21g0305211 Lupinus albus HOM05D006494 ORTHO05D007787 1.9e-12 77.4 245 33.9
Rhsim03G0190000 Rhododendron simsii HOM05D006494 ORTHO05D007787 1.9e-12 77.4 161 41.0
Peaxi162Scf00444g00014 Petunia axillaris HOM05D006494 ORTHO05D007787 2.4e-12 77.0 219 34.7
COL.COLO4_10083 Corchorus olitorius HOM05D006494 ORTHO05D007787 3.2e-12 76.6 149 42.3
Oeu006795.1 Olea europaea HOM05D006494 ORTHO05D007787 3.2e-12 76.6 233 33.0
CSS0030697 Camellia sinensis var. sinensis HOM05D006494 ORTHO05D007787 5.4e-12 75.9 147 40.8
Glyma.20G162200 Glycine max HOM05D006494 ORTHO05D007787 5.4e-12 75.9 226 35.0
Sed0010736 Sechium edule HOM05D006494 ORTHO05D007787 2.0e-11 73.9 211 34.6
SGA_v2.0_scaffold10G05304 Striga asiatica HOM05D006494 ORTHO05D007787 4.6e-11 72.8 216 30.6
FAN14G1471 Fragaria x ananassa HOM05D006494 ORTHO05D007787 7.8e-11 72.0 235 32.3
Oeu022606.1 Olea europaea HOM05D006494 ORTHO05D007787 1.3e-10 71.2 234 32.1
PSO063G3044 Papaver somniferum HOM05D006494 ORTHO05D007787 1.3e-10 71.2 134 39.6
CiPaw.12G091000 Carya illinoinensis HOM05D006494 ORTHO05D007787 2.3e-10 70.5 224 29.9
HanXRQChr09g0252471 Helianthus annuus HOM05D006494 ORTHO05D007787 2.3e-10 70.5 221 33.5
FvH4_6g37300 Fragaria vesca HOM05D006494 ORTHO05D007787 3.0e-10 70.1 236 32.2
FAN02G3807 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.9e-09 67.4 236 31.8
unitig_46.g18800 Utricularia gibba HOM05D006494 ORTHO05D007787 1.9e-09 67.4 206 30.6
Actinidia03131 Actinidia chinensis HOM05D006494 ORTHO05D007787 2.5e-09 67.0 108 41.7
FAN13G0811 Fragaria x ananassa HOM05D006494 ORTHO05D007787 3.3e-09 66.6 240 31.7
FAN05G4065 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.2e-08 64.7 234 31.6
FAN08G0782 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.6e-08 64.3 231 29.0
FAN18G4076 Fragaria x ananassa HOM05D006494 ORTHO05D007787 1.6e-08 64.3 234 29.5
Peaxi162Scf00618g00753 Petunia axillaris HOM05D006494 ORTHO05D007787 2.1e-08 63.9 250 29.2
FvH4_5g32440 Fragaria vesca HOM05D006494 ORTHO05D007787 2.8e-08 63.5 234 29.1
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 3.6e-08 63.2 234 33.8
Lsat_1_v5_gn_9_57501 Lactuca sativa HOM05D006494 ORTHO05D007787 2.3e-07 60.5 192 28.6
PSO478G4343 Papaver somniferum HOM05D006494 ORTHO05D007787 2.3e-07 60.5 234 30.3
RcHm_v2.0_Chr3g0486201 Rosa chinensis HOM05D006494 ORTHO05D007787 8.9e-07 58.5 209 27.8
PSO782G5664 Papaver somniferum HOM05D006494 ORTHO05D007787 2.6e-06 57.0 200 31.0
PGSC0003DMG400017033 Solanum tuberosum HOM05D006494 ORTHO05D007787 7.5e-06 55.5 109 41.3


User provided reference genes

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