Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 3.0e-98 362.1 214 100.0
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 9.1e-79 297.4 212 84.9
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.6e-62 243.4 211 64.9
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.7e-61 240.0 211 64.0
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 3.8e-61 238.8 212 64.2
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 3.8e-61 238.8 212 64.2
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 3.8e-61 238.8 211 63.5
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.8e-61 238.8 214 64.0
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 5.0e-61 238.4 212 64.6
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 5.0e-61 238.4 211 63.0
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 8.5e-61 237.7 211 56.9
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 3.6e-59 232.3 206 62.1
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 1.8e-58 229.9 211 62.1
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 1.5e-57 226.9 211 60.7
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 5.7e-57 224.9 199 63.8
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 7.5e-57 224.6 214 66.8
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 8.3e-56 221.1 211 61.1
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 8.3e-56 221.1 211 71.1
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.1e-55 220.7 211 60.7
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.4e-55 220.3 210 71.0
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 1.8e-55 219.9 211 57.8
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 2.9e-53 212.6 215 67.9
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 6.5e-53 211.5 211 69.2
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.5e-52 210.3 204 61.8
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 3.2e-52 209.1 211 68.7
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 4.2e-52 208.8 216 55.6
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 9.4e-52 207.6 214 58.9
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.1e-51 206.5 215 67.4
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 2.1e-51 206.5 211 57.8
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 2.7e-51 206.1 215 67.4
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 8.0e-51 204.5 215 67.4
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.0e-51 204.5 215 67.4
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 8.0e-51 204.5 214 57.9
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.0e-50 204.1 215 67.0
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.0e-50 204.1 215 67.4
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 3.0e-50 202.6 212 52.4
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.2e-50 201.8 206 54.4
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 5.2e-50 201.8 206 54.4
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 5.2e-50 201.8 215 67.0
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 4.4e-49 198.7 211 67.8
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.5e-49 198.0 204 60.3
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 7.5e-49 198.0 215 65.6
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.7e-48 196.8 205 54.1
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.8e-48 196.1 211 57.8
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.3e-48 194.9 206 54.4
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 6.3e-48 194.9 206 54.4
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.4e-47 193.7 211 61.1
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 3.1e-47 192.6 206 63.6
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.1e-47 192.6 212 55.7
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.1e-47 192.6 212 55.7
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-46 189.9 212 55.2
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.7e-45 186.8 203 66.0
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 2.3e-45 186.4 208 63.0
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 1.1e-44 184.1 144 63.2
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 1.1e-44 184.1 206 62.1
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 1.9e-44 183.3 204 53.4
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 2.5e-44 183.0 212 50.9
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 2.5e-44 183.0 211 67.3
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 3.3e-44 182.6 147 61.9
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 9.5e-44 181.0 206 53.9
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 2.1e-43 179.9 206 61.2
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 4.7e-43 178.7 214 55.1
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.0e-43 177.9 206 53.4
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.3e-42 176.4 196 55.1
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 2.3e-42 176.4 206 52.4
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.0e-42 175.6 196 55.1
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 6.8e-42 174.9 211 54.0
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 8.9e-42 174.5 206 52.9
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 1.2e-41 174.1 206 50.0
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 5.7e-41 171.8 206 52.4
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 2.9e-40 169.5 204 45.1
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 4.9e-40 168.7 200 62.0
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 4.9e-40 168.7 211 53.1
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 8.3e-40 167.9 206 61.7
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 1.8e-39 166.8 206 51.9
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 3.2e-39 166.0 207 54.6
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 4.1e-39 165.6 207 54.1
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 9.2e-39 164.5 212 49.5
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 2.7e-38 162.9 207 51.7
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.7e-38 162.9 199 46.7
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.6e-38 162.2 215 58.6
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 1.0e-37 161.0 209 51.2
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.3e-37 160.6 196 52.0
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.7e-37 160.2 212 51.9
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 3.0e-37 159.5 198 52.5
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 6.6e-37 158.3 206 48.1
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.6e-37 158.3 211 51.7
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.9e-36 156.8 212 51.9
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 1.9e-36 156.8 205 51.2
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 7.3e-36 154.8 198 46.5
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 1.2e-35 154.1 198 46.0
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.8e-35 152.9 202 52.5
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 3.6e-35 152.5 129 55.8
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 4.7e-35 152.1 209 58.4
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.2e-35 151.8 202 52.0
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 6.2e-35 151.8 208 52.4
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 8.0e-35 151.4 184 51.1
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 2.3e-34 149.8 210 49.0
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 6.8e-34 148.3 193 47.2
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 8.9e-34 147.9 207 59.9
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.0e-33 146.7 202 51.5
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 3.4e-33 146.0 213 45.5
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.3e-32 144.1 204 60.8
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 2.2e-32 143.3 214 45.8
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.4e-31 140.6 146 50.0
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 2.4e-31 139.8 204 59.8
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 5.4e-31 138.7 207 53.1
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 7.0e-31 138.3 207 52.7
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 2.7e-30 136.3 204 48.0
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 3.5e-30 136.0 204 58.3
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 6.0e-30 135.2 207 54.1
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.3e-29 134.0 263 37.3
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 2.3e-29 133.3 202 58.4
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 6.6e-29 131.7 207 54.6
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 2.5e-28 129.8 198 41.9
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.3e-28 129.4 210 41.0
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 5.6e-28 128.6 201 43.8
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 7.3e-28 128.3 204 46.6
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 9.5e-28 127.9 208 55.3
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 9.5e-28 127.9 210 41.0
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.2e-27 127.5 211 40.8
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 1.6e-27 127.1 198 41.9
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.8e-27 126.3 210 40.5
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 3.6e-27 125.9 194 43.3
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 3.6e-27 125.9 200 42.0
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 1.8e-26 123.6 210 39.5
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 5.2e-26 122.1 204 54.9
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 8.9e-26 121.3 197 40.1
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 2.0e-25 120.2 211 41.7
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 2.0e-25 120.2 210 38.6
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 5.8e-25 118.6 197 41.6
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 5.8e-25 118.6 201 56.2
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 7.5e-25 118.2 213 40.4
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 1.3e-24 117.5 208 40.9
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.7e-24 117.1 211 39.3
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 2.2e-24 116.7 208 48.1
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.4e-23 114.0 206 40.3
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.4e-23 114.0 210 53.3
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 1.9e-23 113.6 206 41.7
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 9.2e-23 111.3 209 45.0
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 1.2e-22 110.9 212 38.7
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.2e-22 110.9 205 54.1
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 3.5e-22 109.4 199 44.2
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 4.6e-22 109.0 206 42.2
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.0e-21 107.8 206 36.9
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 2.3e-21 106.7 170 57.1
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 2.3e-21 106.7 202 41.6
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 3.0e-21 106.3 214 37.9
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 3.9e-21 105.9 117 61.5
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 6.6e-21 105.1 217 52.1
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 8.6e-21 104.8 197 42.1
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 2.5e-20 103.2 224 36.6
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 4.3e-20 102.4 194 37.6
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 5.6e-20 102.1 193 43.5
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 9.5e-20 101.3 211 39.3
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 2.8e-19 99.8 207 52.7
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 4.7e-19 99.0 214 43.5
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 1.1e-18 97.8 149 39.6
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 1.1e-18 97.8 194 37.6
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.4e-18 97.4 211 37.0
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 2.3e-18 96.7 215 37.7
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.3e-18 96.7 195 43.1
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 3.4e-17 92.8 209 46.9
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 5.8e-17 92.0 106 44.3
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 5.8e-17 92.0 224 47.8
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 7.6e-17 91.7 160 55.6
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.6e-17 91.7 203 36.9
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.9e-16 89.7 203 36.5
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 8.4e-16 88.2 203 42.9
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 1.9e-15 87.0 206 35.0
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 2.1e-14 83.6 229 48.0
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 3.9e-13 79.3 190 37.9
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 1.1e-12 77.8 203 49.8
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 1.1e-12 77.8 202 34.7
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 3.3e-12 76.3 105 56.2
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 7.3e-12 75.1 235 34.9
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 4.7e-11 72.4 105 45.7
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 4.7e-11 72.4 105 45.7
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 1.8e-10 70.5 119 35.3
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 5.2e-10 68.9 148 36.5
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 3.8e-08 62.8 99 43.4
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 8.4e-08 61.6 105 67.6
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 1.1e-07 61.2 212 43.4


User provided reference genes

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