Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G022900 Manihot esculenta HOM05D002831 ORTHO05D010484 4.2e-25 117.1 53 100.0
Manes.06G152150 Manihot esculenta HOM05D002831 ORTHO05D010484 9.3e-25 115.9 53 98.1
Potri.004G080000 Populus trichocarpa HOM05D002831 ORTHO05D010484 4.6e-24 113.6 53 94.3
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 6.6e-23 109.8 52 90.4
Atru.ctg97_1.17 Acer truncatum HOM05D002831 ORTHO05D010484 1.9e-22 108.2 53 88.7
Potri.017G143300 Populus trichocarpa HOM05D002831 ORTHO05D010484 1.3e-21 105.5 53 86.8
MD01G1208000 Malus domestica HOM05D002831 ORTHO05D010484 2.8e-21 104.4 53 86.8
Prupe.2G300500 Prunus persica HOM05D002831 ORTHO05D010484 2.8e-21 104.4 53 86.8
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 8.1e-21 102.8 51 86.3
Nn1g01626 Nelumbo nucifera HOM05D002831 ORTHO05D010484 3.1e-20 100.9 53 86.8
Thecc.03G183800 Theobroma cacao HOM05D002831 ORTHO05D010484 3.1e-20 100.9 53 81.1
Prupe.7G027400 Prunus persica HOM05D002831 ORTHO05D010484 6.9e-20 99.8 51 82.4
CiPaw.06G003400 Carya illinoinensis HOM05D002831 ORTHO05D010484 1.2e-19 99.0 53 83.0
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.5e-19 98.6 52 80.8
CiPaw.06G003200 Carya illinoinensis HOM05D002831 ORTHO05D010484 2.0e-19 98.2 53 81.1
MD07G1278600 Malus domestica HOM05D002831 ORTHO05D010484 3.4e-19 97.4 53 79.2
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 5.8e-19 96.7 52 78.8
Gohir.D09G177300 Gossypium hirsutum HOM05D002831 ORTHO05D010484 9.9e-19 95.9 53 77.4
Gorai.006G199300 Gossypium raimondii HOM05D002831 ORTHO05D010484 1.3e-18 95.5 53 75.5
CSS0001563 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.7e-18 95.1 53 79.2
CSS0038907 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.7e-18 95.1 53 79.2
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 1.7e-18 95.1 52 78.8
Cc02_g02410 Coffea canephora HOM05D002831 ORTHO05D010484 6.4e-18 93.2 53 81.1
Gohir.A12G255400 Gossypium hirsutum HOM05D002831 ORTHO05D010484 8.4e-18 92.8 53 75.5
Gohir.D12G256800 Gossypium hirsutum HOM05D002831 ORTHO05D010484 8.4e-18 92.8 53 75.5
Gorai.008G275000 Gossypium raimondii HOM05D002831 ORTHO05D010484 8.4e-18 92.8 53 75.5
Glyma.20G162551 Glycine max HOM05D002831 ORTHO05D010484 1.1e-17 92.4 53 75.5
Glyma.09G132600 Glycine max HOM05D002831 ORTHO05D010484 1.4e-17 92.0 53 77.4
Glyma.16G179250 Glycine max HOM05D002831 ORTHO05D010484 1.4e-17 92.0 53 77.4
Gohir.D11G011200 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.4e-17 92.0 53 73.6
Gohir.A11G012000 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.9e-17 91.7 53 73.6
Lalb_Chr02g0141241 Lupinus albus HOM05D002831 ORTHO05D010484 5.4e-17 90.1 54 77.8
Peaxi162Scf00444g00118 Petunia axillaris HOM05D002831 ORTHO05D010484 5.4e-17 90.1 53 79.2
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 1.6e-16 88.6 44 88.6
Glyma.10G231251 Glycine max HOM05D002831 ORTHO05D010484 1.6e-16 88.6 53 71.7
Carub.0008s1269 Capsella rubella HOM05D002831 ORTHO05D010484 6.0e-16 86.7 53 69.8
Nitab4.5_0000084g0420 Nicotiana tabacum HOM05D002831 ORTHO05D010484 1.3e-15 85.5 52 76.9
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 1.8e-15 85.1 43 83.7
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 2.3e-15 84.7 44 84.1
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.0e-15 84.3 46 78.3
ClCG05G008350 Citrullus lanatus HOM05D002831 ORTHO05D010484 3.9e-15 84.0 53 69.8
CiPaw.12G018400 Carya illinoinensis HOM05D002831 ORTHO05D010484 5.1e-15 83.6 44 84.1
FAN03G0192 Fragaria x ananassa HOM05D002831 ORTHO05D010484 5.1e-15 83.6 44 81.8
Solyc03g007990.2 Solanum lycopersicum HOM05D002831 ORTHO05D010484 5.1e-15 83.6 53 75.5
Lalb_Chr21g0305231 Lupinus albus HOM05D002831 ORTHO05D010484 1.5e-14 82.0 54 72.2
Lalb_Chr03g0034821 Lupinus albus HOM05D002831 ORTHO05D010484 1.9e-14 81.6 50 70.0
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.5e-14 81.3 44 79.5
CAN.G126.13 Capsicum annuum HOM05D002831 ORTHO05D010484 3.3e-14 80.9 53 75.5
Carub.0007s1529 Capsella rubella HOM05D002831 ORTHO05D010484 5.6e-14 80.1 53 64.2
Nitab4.5_0003825g0100 Nicotiana tabacum HOM05D002831 ORTHO05D010484 5.6e-14 80.1 52 75.0
CSS0020125 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 7.4e-14 79.7 53 71.7
CSS0026204 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 7.4e-14 79.7 53 71.7
CARHR233120 Cardamine hirsuta HOM05D002831 ORTHO05D010484 9.6e-14 79.3 53 66.0
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 1.3e-13 79.0 43 79.1
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 8.1e-13 76.3 45 77.8
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 1.4e-12 75.5 48 72.9
BolC1t02050H Brassica oleracea HOM05D002831 ORTHO05D010484 3.1e-12 74.3 53 62.3
CAN.G204.17 Capsicum annuum HOM05D002831 ORTHO05D010484 5.3e-12 73.6 53 67.9
BraA01t01649Z Brassica rapa HOM05D002831 ORTHO05D010484 9.0e-12 72.8 53 60.4
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 1.2e-11 72.4 43 74.4
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 2.0e-11 71.6 46 69.6
Sabra05G0003700 Salix brachista HOM05D000273 ORTHO05D000198 1.3e-10 68.9 37 81.1
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.3e-10 68.9 43 69.8
BolC1t02047H Brassica oleracea HOM05D002831 ORTHO05D010484 1.7e-10 68.6 53 62.3
BraA01t01646Z Brassica rapa HOM05D002831 ORTHO05D010484 1.7e-10 68.6 53 62.3
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 4.9e-10 67.0 53 56.6
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 6.4e-10 66.6 47 66.0
A03p56200 Brassica napus HOM05D002831 ORTHO05D010484 1.1e-09 65.9 53 56.6
BraA03t14690Z Brassica rapa HOM05D002831 ORTHO05D010484 1.1e-09 65.9 53 56.6
Lalb_Chr06g0161311 Lupinus albus HOM05D002831 ORTHO05D010484 1.1e-09 65.9 44 72.7
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 5.5e-09 63.5 44 75.0
A02p11710 Brassica napus HOM05D002831 ORTHO05D010484 7.1e-09 63.2 37 75.7
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.6e-08 62.0 47 55.3
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 2.1e-08 61.6 33 78.8
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 3.5e-08 60.8 31 83.9
BolC7t45935H Brassica oleracea HOM05D002831 ORTHO05D010484 4.6e-08 60.5 53 52.8
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 4.6e-08 60.5 39 66.7
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.0e-07 59.3 47 57.4
Peaxi162Scf00618g00726 Petunia axillaris HOM05D002831 ORTHO05D010484 1.0e-07 59.3 44 65.9
Carub.0007s1526 Capsella rubella HOM05D002831 ORTHO05D010484 3.9e-07 57.4 45 60.0
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.7e-07 56.2 32 75.0
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.7e-07 56.2 32 75.0
CARHR233140 Cardamine hirsuta HOM05D002831 ORTHO05D010484 1.1e-06 55.8 36 63.9


User provided reference genes

Program Settings