Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.8e-91 338.6 168 100.0
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.4e-82 309.7 166 92.8
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.8e-77 292.7 166 85.5
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.1e-77 291.2 165 85.5
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 8.7e-77 290.4 168 83.9
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 3.3e-76 288.5 170 82.4
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 4.3e-76 288.1 149 92.6
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 4.3e-76 288.1 166 84.9
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 5.6e-76 287.7 178 80.3
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 5.6e-76 287.7 151 91.4
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.6e-76 287.7 166 84.9
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 7.4e-76 287.3 149 91.9
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 9.6e-76 287.0 167 86.2
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.3e-75 286.6 149 91.3
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.3e-75 286.6 166 84.9
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.6e-75 286.2 164 83.5
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 2.8e-75 285.4 168 82.7
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 3.7e-75 285.0 164 84.1
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 3.7e-75 285.0 164 85.4
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.8e-75 284.6 166 83.1
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.2e-75 284.3 164 82.9
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 8.1e-75 283.9 170 82.9
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 8.1e-75 283.9 166 83.7
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 8.1e-75 283.9 149 91.9
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.1e-74 283.5 166 82.5
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 1.1e-74 283.5 166 83.1
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.4e-74 283.1 170 82.9
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.4e-74 283.1 166 81.9
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 4.0e-74 281.6 168 82.7
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.0e-74 281.6 166 81.9
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 5.3e-74 281.2 168 81.5
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.3e-74 281.2 164 85.4
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 6.9e-74 280.8 166 83.1
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 9.0e-74 280.4 149 90.6
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 9.0e-74 280.4 160 83.1
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.2e-73 280.0 151 88.1
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.2e-73 280.0 170 82.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.2e-73 280.0 167 84.4
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.5e-73 279.6 168 81.5
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.0e-73 279.3 168 82.1
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 2.0e-73 279.3 166 83.1
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 3.4e-73 278.5 168 80.4
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 3.4e-73 278.5 168 83.3
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 3.4e-73 278.5 169 80.5
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 5.8e-73 277.7 168 81.0
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 5.8e-73 277.7 166 80.1
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 5.8e-73 277.7 168 80.4
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 5.8e-73 277.7 168 81.5
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 7.6e-73 277.3 151 86.8
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 7.6e-73 277.3 169 80.5
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 7.6e-73 277.3 168 80.4
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 7.6e-73 277.3 163 82.8
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 7.6e-73 277.3 168 81.5
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.0e-72 276.9 169 80.5
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.0e-72 276.9 166 79.5
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 1.0e-72 276.9 149 88.6
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.3e-72 276.6 164 80.5
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 1.3e-72 276.6 168 79.8
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.3e-72 276.6 167 80.8
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 1.3e-72 276.6 149 87.2
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 1.3e-72 276.6 176 78.4
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 1.7e-72 276.2 151 88.1
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 2.2e-72 275.8 168 81.5
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 2.2e-72 275.8 168 81.5
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 2.2e-72 275.8 169 79.9
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 2.9e-72 275.4 168 78.0
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 3.8e-72 275.0 166 80.1
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 4.9e-72 274.6 169 79.3
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 4.9e-72 274.6 169 79.3
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.9e-72 274.6 151 86.1
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 4.9e-72 274.6 170 79.4
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 4.9e-72 274.6 173 77.5
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 4.9e-72 274.6 170 80.6
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 6.5e-72 274.2 151 87.4
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 6.5e-72 274.2 168 81.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 6.5e-72 274.2 171 77.8
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 8.4e-72 273.9 168 79.2
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 8.4e-72 273.9 151 86.1
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.4e-72 273.9 151 86.1
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.4e-72 273.9 151 86.1
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.4e-72 273.9 166 78.3
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 8.4e-72 273.9 166 78.3
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-71 273.5 151 85.4
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.1e-71 273.5 151 85.4
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.4e-71 273.1 165 81.8
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.9e-71 272.7 151 86.1
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 2.5e-71 272.3 166 78.3
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 2.5e-71 272.3 151 86.1
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.2e-71 271.9 151 85.4
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 5.5e-71 271.2 150 84.7
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 5.5e-71 271.2 150 84.7
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 5.5e-71 271.2 178 75.3
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 5.5e-71 271.2 146 89.7
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 5.5e-71 271.2 177 76.3
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 7.1e-71 270.8 174 77.0
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 7.1e-71 270.8 166 78.9
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 7.1e-71 270.8 166 80.1
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 9.3e-71 270.4 178 74.7
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 9.3e-71 270.4 155 83.2
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 9.3e-71 270.4 166 77.7
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 9.3e-71 270.4 176 79.0
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-70 270.0 172 77.9
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 1.2e-70 270.0 178 76.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 2.1e-70 269.2 166 79.5
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 3.5e-70 268.5 153 85.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 4.6e-70 268.1 153 85.6
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 4.6e-70 268.1 153 85.6
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 4.6e-70 268.1 166 77.1
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 1.0e-69 266.9 155 81.9
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.8e-69 266.2 151 84.1
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 2.3e-69 265.8 174 77.6
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.0e-69 265.4 174 77.6
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 3.9e-69 265.0 151 85.4
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 3.9e-69 265.0 174 77.6
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 5.1e-69 264.6 167 79.0
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.5e-68 262.3 153 85.0
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 5.7e-68 261.2 153 83.0
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 7.4e-68 260.8 168 76.8
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 7.4e-68 260.8 168 76.8
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 1.6e-67 259.6 154 82.5
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.6e-67 259.6 220 61.4
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 2.1e-67 259.2 175 75.4
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.7e-67 258.5 175 75.4
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 4.8e-67 258.1 156 80.8
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 6.3e-67 257.7 153 81.0
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 8.2e-67 257.3 154 80.5
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 8.2e-67 257.3 175 74.9
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 1.4e-66 256.5 162 78.4
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.8e-66 256.1 154 79.2
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 6.9e-66 254.2 154 78.6
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 3.4e-65 251.9 154 78.6
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.7e-64 249.6 151 78.8
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 2.5e-63 245.7 162 74.7
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 9.3e-63 243.8 162 73.5
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.0e-61 240.4 161 70.8
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.5e-60 236.5 138 79.0
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 2.5e-60 235.7 138 79.0
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 9.7e-60 233.8 166 69.9
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 2.6e-57 225.7 128 84.4
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 1.1e-55 220.3 168 67.9
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 9.4e-55 217.2 127 82.7
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 4.3e-52 208.4 110 87.3
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 5.7e-52 208.0 164 58.5
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 3.1e-50 202.2 132 75.8
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 6.7e-45 184.5 109 78.9
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 7.4e-44 181.0 134 65.7
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.8e-43 178.3 154 61.0
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 7.0e-42 174.5 108 83.3
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 9.1e-42 174.1 133 60.2
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 3.5e-41 172.2 191 50.3
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 1.3e-40 170.2 134 60.4
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 3.8e-40 168.7 134 60.4
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 3.0e-37 159.1 168 56.5
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 1.1e-34 150.6 91 79.1
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.8e-34 149.8 88 84.1
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 1.3e-32 143.7 86 83.7
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 4.2e-31 138.7 120 55.0
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 9.8e-28 127.5 99 62.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 3.7e-27 125.6 105 66.7
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 6.3e-27 124.8 98 67.3
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 5.0e-24 115.2 168 45.8
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 2.5e-23 112.8 71 77.5
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 4.2e-23 112.1 120 44.2
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.6e-22 109.0 164 39.0
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.0e-22 107.8 120 43.3
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.0e-22 107.8 120 43.3
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.8e-21 106.7 61 77.0
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 2.3e-21 106.3 57 82.5
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 5.7e-20 101.7 66 69.7
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.9e-16 89.4 55 76.4
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.1e-15 87.4 100 43.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.1e-15 87.4 100 43.0
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 3.3e-15 85.9 49 77.6
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 9.5e-15 84.3 95 42.1
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 2.6e-12 76.3 48 64.6
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.8e-10 70.1 95 42.1


User provided reference genes

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