Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 0.0e+00 1410.2 704 100.0
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 3.4e-276 954.9 630 76.8
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.5e-271 939.5 641 75.0
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 7.7e-268 927.2 635 74.5
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 2.5e-266 922.2 644 74.2
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 2.0e-263 912.5 632 74.1
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 1.1e-261 906.7 646 72.6
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.6e-260 902.9 635 72.8
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.6e-260 902.9 631 72.6
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.2e-259 899.0 631 72.1
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 2.2e-259 899.0 631 72.3
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 1.2e-257 893.3 664 70.2
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 3.0e-256 888.6 640 70.3
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 5.2e-256 887.9 635 72.1
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 2.7e-252 875.5 625 70.1
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 2.2e-251 872.5 630 70.2
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 8.5e-251 870.5 626 71.1
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 5.5e-250 867.8 630 69.2
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.0e-248 863.6 685 66.4
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 1.3e-246 856.7 630 69.5
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 1.7e-246 856.3 621 71.5
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.4e-245 853.2 611 71.0
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 7.7e-244 847.4 639 68.1
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 5.5e-242 841.3 616 69.3
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 7.2e-242 840.9 627 68.7
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 1.4e-240 836.6 629 67.9
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 1.5e-239 833.2 626 68.1
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 1.1e-237 827.0 620 68.9
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 1.7e-235 819.7 644 66.5
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 1.6e-233 813.1 716 62.0
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 8.0e-233 810.8 616 67.2
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 3.7e-230 802.0 633 65.1
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 7.8e-228 794.3 631 65.3
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.3e-227 793.5 622 65.0
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 1.7e-227 793.1 653 65.8
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 1.8e-224 783.1 641 64.1
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 7.0e-221 771.2 629 64.2
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 2.1e-220 769.6 669 60.2
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 1.1e-218 763.8 631 63.4
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 3.6e-217 758.8 656 62.3
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 3.1e-216 755.7 624 63.5
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 4.0e-216 755.4 748 58.2
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 6.8e-216 754.6 521 73.1
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 2.7e-212 742.7 637 63.9
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 2.9e-206 722.6 640 60.8
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.9e-206 722.6 634 61.5
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.3e-203 713.8 524 70.8
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 2.8e-201 706.1 529 69.2
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.8e-200 703.4 525 70.1
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 2.2e-198 696.4 620 60.8
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 2.7e-196 689.5 527 65.3
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.1e-192 676.0 630 59.4
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.3e-192 675.2 641 59.1
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 1.5e-191 673.7 548 65.0
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.4e-189 667.2 666 56.9
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.4e-189 667.2 665 57.0
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 3.1e-184 649.4 675 55.1
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 5.3e-184 648.7 509 68.0
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.9e-176 621.7 693 52.8
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 6.5e-174 615.1 464 70.0
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 5.1e-171 605.5 624 48.6
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 2.2e-169 600.1 538 62.6
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 4.5e-167 592.4 464 65.3
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 8.8e-163 578.2 437 68.4
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 9.1e-160 568.2 438 67.8
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 2.5e-157 560.1 424 68.9
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 7.2e-157 558.5 461 62.0
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 5.1e-155 552.4 465 65.4
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.1e-154 551.2 435 64.8
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 1.5e-154 550.8 515 59.6
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 5.7e-154 548.9 388 70.4
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.2e-153 547.0 465 65.2
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 3.7e-153 546.2 457 63.7
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 2.6e-151 540.0 309 81.9
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 6.7e-147 525.4 379 70.4
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 5.7e-146 522.3 434 63.6
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 1.0e-139 501.5 289 79.2
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 7.2e-133 478.8 444 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 4.5e-127 459.5 637 41.8
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 1.4e-123 448.0 623 44.1
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 5.7e-122 442.6 244 85.2
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 5.2e-115 419.5 622 39.5
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 9.3e-88 328.9 238 68.1
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 2.6e-82 310.8 272 62.1
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 4.6e-79 300.1 283 60.1
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 7.8e-79 299.3 173 85.5
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 7.3e-77 292.7 173 81.5
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 1.3e-76 292.0 326 49.1
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 9.0e-75 285.8 173 79.2
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.3e-73 282.0 155 87.1
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 3.8e-73 280.4 253 54.2
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.3e-70 271.9 156 81.4
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 4.5e-66 256.9 176 71.0
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.4e-64 251.9 597 32.7
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 1.9e-64 251.5 209 61.7
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 9.6e-61 239.2 173 67.6
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 9.6e-61 239.2 179 67.6
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 3.7e-60 237.3 173 67.1
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 6.2e-60 236.5 131 85.5
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.4e-59 235.3 173 65.9
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 4.1e-59 233.8 173 64.7
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 5.3e-59 233.4 173 65.3
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 1.7e-57 228.4 175 65.7
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.5e-53 215.3 238 50.4
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 2.4e-51 208.0 115 82.6
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 4.5e-50 203.8 173 61.8
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 1.3e-49 202.2 102 90.2
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 6.5e-49 199.9 133 76.7
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 8.5e-49 199.5 134 76.1
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 1.1e-48 199.1 100 91.0
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 4.6e-47 193.7 173 59.0
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 6.7e-46 189.9 130 70.0
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 2.0e-42 178.3 131 68.7
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 3.2e-40 171.0 808 23.1
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.2e-36 158.3 88 83.0
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 1.4e-35 155.6 114 75.4
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 1.1e-32 146.0 203 46.8
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 5.5e-32 143.7 137 50.4
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 1.2e-26 125.9 76 76.3
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 2.6e-26 124.8 198 33.3
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 4.8e-20 104.0 69 66.7
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 5.0e-17 94.0 58 72.4
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 3.2e-16 91.3 62 71.0
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.0e-14 86.3 77 57.1
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.0e-14 84.3 56 69.6
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 1.7e-12 79.0 60 63.3
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 6.3e-12 77.0 44 77.3
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 5.9e-10 70.5 42 73.8
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 1.0e-09 69.7 69 49.3
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 3.8e-09 67.8 48 68.8
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 6.6e-09 67.0 88 46.6
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 1.5e-08 65.9 57 57.9
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 2.5e-08 65.1 225 26.2
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 5.6e-08 63.9 88 44.3
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 7.2e-08 63.5 88 44.3
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 9.5e-08 63.2 187 29.9
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 9.5e-08 63.2 221 24.4
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 9.5e-08 63.2 223 24.2
Ah.08g222720 Amaranthus hybridus HOM05D006479 ORTHO05D008310 2.1e-07 62.0 302 21.9
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 2.1e-07 62.0 234 23.1
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 2.8e-07 61.6 40 75.0
Lsat_1_v5_gn_6_22840 Lactuca sativa HOM05D000836 ORTHO05D000709 3.6e-07 61.2 225 25.8
Duzib192G0063 Durio zibethinus HOM05D004669 ORTHO05D005767 4.7e-07 60.8 218 23.4
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 4.7e-07 60.8 227 22.9
Thecc.06G074100 Theobroma cacao HOM05D004669 ORTHO05D005767 6.1e-07 60.5 218 23.4
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 8.0e-07 60.1 253 23.3
Cfa018843 Carpinus fangiana HOM05D002332 ORTHO05D002509 1.0e-06 59.7 151 29.8
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 1.4e-06 59.3 221 21.7
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 1.4e-06 59.3 221 21.7
Gohir.D13G210800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 1.4e-06 59.3 235 24.7
TAR636G0609 Trochodendron aralioides HOM05D004669 ORTHO05D005767 1.4e-06 59.3 221 21.7
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 1.8e-06 58.9 234 24.8
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 1.8e-06 58.9 237 22.8
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 1.8e-06 58.9 151 28.5
Gorai.013G240700 Gossypium raimondii HOM05D000836 ORTHO05D000709 1.8e-06 58.9 235 23.8
Potri.006G248100 Populus trichocarpa HOM05D000836 ORTHO05D000709 1.8e-06 58.9 224 25.0
Aqoxy7G02078 Aquilegia oxysepala HOM05D004669 ORTHO05D005767 2.3e-06 58.5 221 22.6
CSS0009653 Camellia sinensis var. sinensis HOM05D004669 ORTHO05D005767 2.3e-06 58.5 221 21.7
Haze_07236 Corylus avellana HOM05D002332 ORTHO05D002509 3.0e-06 58.2 151 29.1
ECA038G0001 Erigeron canadensis HOM05D004669 ORTHO05D005767 3.0e-06 58.2 204 24.0
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 3.0e-06 58.2 272 22.8
SEGI_00336 Sequoiadendron giganteum HOM05D004669 ORTHO05D005767 3.0e-06 58.2 218 22.9
Gohir.A13G206200 Gossypium hirsutum HOM05D000836 ORTHO05D000709 4.0e-06 57.8 230 23.5
Potri.001G173500 Populus trichocarpa HOM05D004669 ORTHO05D005767 4.0e-06 57.8 221 21.7
Manes.11G052400 Manihot esculenta HOM05D004669 ORTHO05D005767 5.2e-06 57.4 205 22.9
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 6.8e-06 57.0 257 22.2
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 6.8e-06 57.0 151 27.8
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 6.8e-06 57.0 151 27.8
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 8.9e-06 56.6 227 22.5
Dinv30566 Davidia involucrata HOM05D004669 ORTHO05D005767 8.9e-06 56.6 205 22.4
Duzib168G0754 Durio zibethinus HOM05D000836 ORTHO05D000709 8.9e-06 56.6 218 23.9
MD15G1103400 Malus domestica HOM05D000836 ORTHO05D000709 8.9e-06 56.6 246 22.8
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 8.9e-06 56.6 115 31.3
Sc08g0007060 Simmondsia chinensis HOM05D000836 ORTHO05D000709 8.9e-06 56.6 180 23.9
TWI12G0769 Tripterygium wilfordii HOM05D004669 ORTHO05D005767 8.9e-06 56.6 221 22.2
Zm00001eb293800 Zea mays HOM05D004669 ORTHO05D005767 8.9e-06 56.6 223 24.7


User provided reference genes

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