Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 3.0e-252 874.8 467 100.0
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 2.5e-158 562.8 467 69.8
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.7e-141 505.8 447 65.5
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.9e-137 493.4 472 61.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 1.2e-136 490.7 442 63.6
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.2e-117 426.8 468 54.7
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.8e-117 425.6 469 56.5
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 4.8e-117 425.6 448 57.6
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 4.8e-117 425.6 469 55.9
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 4.1e-116 422.5 475 54.9
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.8e-111 407.1 448 55.6
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 3.3e-110 402.9 469 53.5
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 5.7e-110 402.1 452 54.9
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 7.4e-110 401.7 519 51.1
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 9.7e-110 401.4 488 50.4
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 1.1e-105 387.9 469 52.5
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 7.2e-105 385.2 472 52.8
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 7.2e-105 385.2 423 54.8
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 5.2e-103 379.0 447 53.9
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 8.8e-103 378.3 447 53.9
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.2e-99 367.9 443 51.2
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 3.5e-99 366.3 451 51.2
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 7.7e-99 365.2 451 51.0
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 3.8e-98 362.8 448 52.2
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 8.5e-98 361.7 455 53.2
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.5e-97 360.1 456 51.1
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 4.7e-96 355.9 458 48.7
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 4.7e-96 355.9 453 49.4
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 4.7e-96 355.9 471 51.4
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 8.8e-95 351.7 452 48.5
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.2e-94 351.3 448 50.0
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 2.0e-94 350.5 520 46.0
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.7e-93 347.4 458 50.4
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 2.2e-93 347.1 467 49.7
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 2.8e-93 346.7 470 49.8
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 8.3e-93 345.1 469 48.4
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.1e-92 344.7 445 50.8
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 2.4e-92 343.6 456 49.6
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 9.1e-92 341.7 455 50.5
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 2.0e-91 340.5 450 48.0
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 4.5e-91 339.3 502 46.2
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 4.5e-91 339.3 410 54.4
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.7e-90 337.4 492 47.2
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.3e-90 337.0 324 60.8
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 5.0e-90 335.9 482 47.9
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 1.5e-89 334.3 470 47.7
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 9.5e-89 331.6 440 49.1
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 1.2e-88 331.3 462 49.4
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 1.6e-88 330.9 450 48.9
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 4.7e-88 329.3 468 46.6
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 4.7e-88 329.3 454 48.0
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 6.1e-88 328.9 447 50.1
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 6.8e-87 325.5 467 46.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 4.4e-86 322.8 448 45.3
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 2.9e-85 320.1 453 46.1
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.1e-84 318.2 428 48.8
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.4e-84 317.8 396 51.0
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 2.4e-84 317.0 451 48.1
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.2e-84 316.6 413 49.2
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 9.2e-84 315.1 464 44.4
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.6e-83 314.3 447 46.1
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 3.5e-83 313.2 452 46.5
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.3e-82 310.5 451 47.2
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 3.9e-82 309.7 430 49.3
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.6e-80 304.3 453 46.4
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.8e-80 303.5 467 43.3
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 6.2e-80 302.4 461 44.3
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 3.1e-79 300.1 449 45.7
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 5.2e-79 299.3 475 44.2
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 1.2e-78 298.1 422 46.9
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.5e-78 297.7 455 47.0
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 2.6e-78 297.0 463 45.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 9.8e-78 295.0 450 44.7
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.3e-77 294.7 456 43.6
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 3.7e-77 293.1 492 44.3
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 3.7e-77 293.1 387 46.3
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 8.3e-77 292.0 450 43.8
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.1e-76 291.6 472 43.4
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.9e-76 290.8 466 45.5
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 4.6e-75 286.2 389 45.5
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.1e-73 281.6 463 44.3
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-72 277.7 473 44.6
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-72 277.7 473 44.6
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 6.2e-72 275.8 339 49.3
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.0e-71 273.1 475 43.4
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.5e-70 271.2 503 41.6
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.0e-70 270.8 340 50.0
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 3.4e-70 270.0 454 42.3
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 1.7e-69 267.7 449 42.3
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 1.3e-66 258.1 460 41.1
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.7e-66 257.7 452 40.3
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 7.3e-65 252.3 454 40.3
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.1e-64 250.8 444 42.6
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 3.6e-64 250.0 462 41.8
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 8.1e-64 248.8 468 40.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.1e-63 248.4 452 42.9
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 1.5e-62 244.6 480 40.0
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 3.4e-62 243.4 451 39.5
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.4e-60 238.0 365 43.8
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 4.1e-60 236.5 295 51.2
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 7.8e-59 232.3 407 42.8
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 8.1e-56 222.2 344 44.5
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.4e-55 221.5 462 38.3
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 5.2e-55 219.5 386 41.2
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.8e-55 219.2 374 40.6
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 8.9e-55 218.8 225 54.2
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-54 218.0 288 47.6
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 1.7e-53 214.5 407 40.8
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.4e-52 211.5 191 59.7
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-51 208.0 307 45.6
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 2.1e-51 207.6 259 49.8
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 2.1e-51 207.6 428 38.1
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 7.8e-51 205.7 456 38.6
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 7.8e-51 205.7 456 38.6
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 7.3e-49 199.1 441 37.2
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.3e-48 198.4 459 37.3
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.9e-45 187.2 295 44.7
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 1.9e-44 184.5 465 33.8
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 6.0e-43 179.5 441 34.0
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-41 174.5 169 56.8
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.0e-38 164.5 469 34.8
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 4.9e-37 159.8 221 47.1
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.5e-35 153.7 219 43.8
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.5e-35 153.7 269 39.0
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 2.3e-34 151.0 310 37.7
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 1.5e-30 138.3 136 55.9
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.4e-30 137.1 161 52.2
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 4.1e-23 113.6 230 40.0
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 6.9e-23 112.8 140 54.3
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.2e-21 107.8 161 47.8
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.4e-20 105.1 158 48.1
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.1e-17 95.5 235 35.3
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 1.8e-15 88.2 84 57.1
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 7.9e-11 72.8 134 38.1
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 5.1e-10 70.1 163 33.1
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.7e-08 65.1 122 33.6
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 8.2e-08 62.8 102 39.2
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 8.2e-08 62.8 92 43.5
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 4.1e-07 60.5 133 38.3


User provided reference genes

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