Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.1e-220 769.6 376 100.0
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 8.7e-194 680.2 375 87.2
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.3e-181 639.8 376 82.2
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.6e-179 632.9 376 81.6
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 1.0e-178 630.2 377 80.6
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 1.4e-178 629.8 377 81.2
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 3.9e-178 628.2 401 76.6
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 5.7e-177 624.4 376 80.3
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 9.7e-177 623.6 376 80.3
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 9.7e-177 623.6 376 80.9
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 2.2e-176 622.5 377 80.4
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 2.2e-176 622.5 375 78.7
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 3.7e-176 621.7 375 79.5
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 4.8e-176 621.3 375 79.2
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 4.8e-176 621.3 375 81.1
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.1e-175 620.2 376 79.8
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.1e-175 620.2 376 79.5
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.8e-175 619.4 375 80.0
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 2.4e-175 619.0 375 79.2
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 3.1e-175 618.6 376 80.1
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 4.5e-174 614.8 399 75.2
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.0e-173 613.6 376 80.1
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.5e-173 610.9 390 76.7
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 8.5e-173 610.5 378 78.3
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 1.5e-172 609.8 379 78.6
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 2.1e-171 605.9 379 78.6
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 8.0e-171 604.0 376 79.0
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 5.2e-170 601.3 377 76.9
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 5.2e-170 601.3 378 77.2
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 8.8e-170 600.5 377 77.5
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.1e-169 600.1 378 77.2
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.6e-169 599.0 375 76.8
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 2.6e-169 599.0 395 75.7
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 4.4e-169 598.2 372 76.3
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.1e-167 593.6 342 82.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.4e-167 592.4 377 77.5
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 5.3e-167 591.3 375 77.6
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 7.0e-167 590.9 375 76.0
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 9.1e-167 590.5 375 76.8
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.0e-165 587.0 383 74.7
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 1.3e-165 586.6 377 75.9
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 2.2e-165 585.9 375 74.1
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.2e-165 585.9 376 75.8
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 2.2e-165 585.9 375 74.1
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.9e-165 585.5 378 76.2
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 2.9e-165 585.5 375 76.0
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 3.8e-165 585.1 375 76.3
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 8.5e-165 583.9 377 76.1
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.9e-164 582.8 369 76.7
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.5e-164 582.4 377 75.3
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 4.2e-164 581.6 375 74.4
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 7.2e-164 580.9 375 76.8
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 9.4e-164 580.5 375 74.4
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 4.7e-163 578.2 378 75.1
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 6.1e-163 577.8 377 74.0
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 8.8e-162 573.9 378 74.3
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 1.2e-161 573.5 375 74.1
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 9.8e-161 570.5 377 76.1
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.7e-160 569.7 376 73.7
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 2.2e-160 569.3 317 85.5
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.8e-160 568.9 378 73.5
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.8e-160 568.2 377 71.9
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.4e-159 566.6 378 71.2
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.4e-159 566.6 317 83.9
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.8e-159 566.2 376 75.8
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 3.1e-159 565.5 368 73.6
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 3.1e-159 565.5 375 73.9
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.7e-158 562.4 377 71.9
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.0e-157 560.5 377 71.4
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 1.3e-157 560.1 374 72.2
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.3e-157 560.1 381 73.8
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 3.8e-157 558.5 379 73.1
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 5.0e-157 558.1 378 70.1
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 6.5e-157 557.8 389 71.0
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 8.5e-157 557.4 323 81.1
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.1e-156 557.0 377 70.0
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 2.5e-156 555.8 376 70.7
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 2.5e-156 555.8 373 71.6
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.5e-156 555.8 307 85.3
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.2e-155 553.5 332 78.3
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.2e-155 553.5 370 73.5
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 2.1e-155 552.7 377 71.4
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 2.1e-155 552.7 377 71.4
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 6.1e-155 551.2 377 71.1
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 3.0e-154 548.9 378 71.2
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 3.0e-154 548.9 378 71.2
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 6.8e-154 547.7 378 69.8
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.2e-153 547.0 377 70.3
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.5e-153 546.6 349 76.8
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.6e-153 545.8 378 69.8
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 5.7e-153 544.7 378 69.6
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 5.7e-153 544.7 315 79.4
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 2.2e-152 542.7 376 69.7
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 3.7e-152 542.0 317 81.1
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.7e-152 542.0 377 69.5
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.8e-151 539.7 326 77.3
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 2.4e-151 539.3 379 68.3
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 2.7e-150 535.8 378 68.5
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 4.5e-150 535.0 399 66.9
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 5.9e-150 534.6 378 70.1
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 1.3e-149 533.5 317 79.2
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 2.3e-149 532.7 377 67.9
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 2.9e-149 532.3 300 81.7
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 6.6e-149 531.2 378 69.0
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 1.5e-148 530.0 345 70.4
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 5.5e-148 528.1 315 76.8
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 7.2e-148 527.7 377 67.4
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 2.8e-147 525.8 305 79.3
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 1.8e-146 523.1 373 67.8
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 8.3e-144 514.2 350 74.6
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.4e-143 513.5 317 74.4
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 7.0e-143 511.1 373 67.6
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.2e-142 510.4 315 74.6
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 6.6e-141 504.6 315 74.0
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.5e-140 502.7 322 74.2
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.8e-139 499.2 346 71.4
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 6.1e-139 498.0 350 73.4
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 6.1e-139 498.0 303 74.3
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 5.2e-138 495.0 315 73.3
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 6.8e-138 494.6 374 66.0
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.2e-137 493.8 324 75.3
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 2.6e-137 492.7 322 70.2
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 4.1e-135 485.3 323 71.8
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 6.0e-134 481.5 331 69.5
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 3.3e-132 475.7 348 70.1
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 5.2e-130 468.4 323 73.7
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 6.8e-130 468.0 378 63.8
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 4.1e-127 458.8 291 73.9
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 4.6e-126 455.3 293 70.3
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.3e-125 453.8 257 80.9
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.3e-124 448.0 293 67.6
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.2e-121 440.7 241 86.7
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.3e-117 427.2 358 61.7
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 1.9e-116 423.3 317 60.9
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 6.2e-115 418.3 302 65.9
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 4.4e-113 412.1 283 73.9
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 4.2e-111 405.6 326 58.3
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 5.1e-109 398.7 302 60.6
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 8.1e-107 391.3 231 77.9
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.1e-106 391.0 377 54.6
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.4e-106 390.6 261 74.7
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 1.3e-104 384.0 293 62.8
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 5.4e-103 378.6 234 79.9
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 4.2e-95 352.4 231 72.7
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.5e-94 349.4 195 83.6
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 1.0e-93 347.8 216 79.6
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 3.0e-93 346.3 195 83.6
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 1.1e-82 311.2 220 73.6
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.8e-75 286.6 342 48.0
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.4e-71 274.2 344 43.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 2.3e-69 266.9 215 65.1
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 2.5e-68 263.5 299 48.5
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 5.7e-68 262.3 301 46.2
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 2.8e-67 260.0 306 46.1
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.4e-58 231.1 181 67.4
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.3e-52 209.9 114 83.3
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 9.7e-52 208.4 153 69.9
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.6e-44 183.7 289 39.4
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 8.0e-38 162.2 94 86.2
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-37 161.0 92 87.0
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 4.0e-37 159.8 158 57.6
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.2e-36 158.3 94 84.0
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 2.0e-36 157.5 92 84.8
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 3.4e-36 156.8 158 57.0
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 3.7e-35 153.3 131 63.4
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 2.9e-32 143.7 101 74.3
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 9.5e-31 138.7 74 83.8
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 4.4e-28 129.8 66 90.9
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 1.4e-26 124.8 320 29.7
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 2.0e-25 120.9 73 72.6
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 3.5e-25 120.2 99 62.6
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 5.0e-24 116.3 92 69.6
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 1.1e-23 115.2 133 51.1
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 1.9e-23 114.4 120 53.3
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.8e-22 110.5 69 71.0
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 2.7e-17 94.0 57 75.4
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.3e-16 91.7 51 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.1e-15 88.6 244 30.3
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 4.4e-12 76.6 42 81.0
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 7.5e-12 75.9 45 77.8
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 9.2e-10 68.9 46 65.2
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 1.7e-08 64.7 39 76.9
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.9e-08 63.5 34 88.2
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 1.5e-07 61.6 42 64.3
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 1.5e-07 61.6 42 64.3
CDE06G0983 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.2e-06 58.5 106 35.8


User provided reference genes

Program Settings