Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 4.1e-75 284.6 145 100.0
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 1.9e-51 206.1 145 72.4
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 9.0e-46 187.2 143 69.9
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 2.6e-45 185.7 143 69.2
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 7.6e-45 184.1 143 68.5
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 2.9e-44 182.2 142 64.1
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 1.9e-43 179.5 137 65.7
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 3.2e-43 178.7 143 67.1
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 4.2e-43 178.3 145 66.9
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 9.3e-43 177.2 141 66.7
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 2.1e-42 176.0 146 65.8
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 1.3e-41 173.3 147 65.3
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 3.0e-41 172.2 145 62.1
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 8.7e-41 170.6 145 61.4
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.1e-40 170.2 145 62.8
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 7.3e-40 167.5 149 61.1
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 9.6e-40 167.2 155 60.6
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 1.6e-39 166.4 146 61.6
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.6e-39 166.4 146 61.6
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.6e-39 166.4 146 61.6
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 8.1e-39 164.1 147 61.2
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 1.8e-38 162.9 145 60.0
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 3.1e-38 162.2 144 61.1
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 6.9e-38 161.0 126 66.7
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 6.9e-38 161.0 146 59.6
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 9.0e-38 160.6 144 59.0
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 9.0e-38 160.6 144 59.0
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 2.6e-37 159.1 140 60.0
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 3.4e-37 158.7 141 59.6
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 4.5e-37 158.3 146 61.0
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 9.9e-37 157.1 143 60.1
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 1.7e-36 156.4 146 58.2
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 1.7e-36 156.4 143 59.4
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 1.7e-36 156.4 143 59.4
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 2.2e-36 156.0 141 58.2
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 3.8e-36 155.2 148 57.4
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 4.9e-36 154.8 146 52.7
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 4.9e-36 154.8 147 57.1
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 4.9e-36 154.8 142 57.7
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 6.4e-36 154.5 143 58.0
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 6.4e-36 154.5 144 59.7
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 8.4e-36 154.1 147 57.1
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 1.4e-35 153.3 139 59.7
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 2.4e-35 152.5 125 63.2
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 2.4e-35 152.5 144 57.6
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 3.2e-35 152.1 144 56.9
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 9.3e-35 150.6 125 61.6
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 1.6e-34 149.8 146 56.2
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 1.6e-34 149.8 146 56.2
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 2.7e-34 149.1 143 58.0
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 3.5e-34 148.7 127 63.8
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 1.0e-33 147.1 156 51.3
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.3e-33 146.7 115 61.7
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 1.3e-33 146.7 151 49.7
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 1.8e-33 146.4 148 56.8
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 2.3e-33 146.0 148 56.8
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 8.7e-33 144.1 145 49.7
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 1.1e-32 143.7 147 53.1
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 1.9e-32 142.9 148 55.4
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 4.3e-32 141.7 148 54.7
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 2.8e-31 139.0 151 47.0
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 2.8e-31 139.0 99 67.7
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 3.7e-31 138.7 136 57.4
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 1.8e-30 136.3 148 51.4
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 1.5e-29 133.3 149 49.7
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 7.6e-29 131.0 136 54.4
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 1.7e-28 129.8 104 60.6
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 4.9e-28 128.3 136 51.5
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 6.4e-28 127.9 142 52.8
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 8.4e-28 127.5 148 45.3
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 1.4e-27 126.7 155 50.3
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 1.9e-27 126.3 123 56.9
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 2.4e-27 125.9 121 57.0
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 9.3e-27 124.0 137 54.0
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.2e-26 123.6 101 60.4
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 2.1e-26 122.9 137 53.3
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 2.1e-26 122.9 140 52.1
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 1.3e-25 120.2 155 52.3
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.3e-25 120.2 155 47.1
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.3e-25 120.2 155 47.1
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 5.1e-25 118.2 144 46.5
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 5.6e-24 114.8 108 61.1
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 1.3e-23 113.6 150 46.7
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 2.8e-23 112.5 123 56.1
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 1.8e-22 109.8 95 61.1
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 2.4e-22 109.4 147 48.3
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 2.4e-22 109.4 109 56.9
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 2.0e-21 106.3 118 46.6
Atru.chr2.3597 Acer truncatum HOM05D007364 ORTHO05D009275 7.6e-21 104.4 70 65.7
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 4.9e-20 101.7 112 45.5
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 8.4e-20 100.9 144 43.8
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.4e-19 100.1 99 53.5
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 9.3e-19 97.4 152 41.4
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.2e-18 97.1 152 41.4
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 1.6e-18 96.7 100 54.0
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 6.0e-18 94.7 101 60.4
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 1.3e-17 93.6 115 44.3
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 2.3e-17 92.8 118 43.2
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 5.1e-17 91.7 123 43.1
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 2.5e-16 89.4 101 53.5
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 4.1e-14 82.0 110 40.9
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 2.6e-13 79.3 106 38.7
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 7.7e-13 77.8 135 34.8
Mapoly0061s0135 Marchantia polymorpha HOM05D007364 ORTHO05D009275 1.3e-12 77.0 120 35.0
AUR62015398 Chenopodium quinoa HOM05D007364 ORTHO05D009275 2.2e-12 76.3 64 50.0
AUR62040375 Chenopodium quinoa HOM05D007364 ORTHO05D009275 6.5e-12 74.7 68 47.1
Pp3c19_20210 Physcomitrium patens HOM05D007364 ORTHO05D009275 7.9e-10 67.8 137 32.8
SEGI_24559 Sequoiadendron giganteum HOM05D007364 ORTHO05D009275 8.8e-09 64.3 109 34.9
SalBow7G1183 Salvia bowleyana HOM05D003223 ORTHO05D004865 2.2e-07 59.7 107 38.3


User provided reference genes

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