Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G007000 Manihot esculenta HOM05D005772 ORTHO05D006468 1.6e-143 512.7 253 100.0
Potri.007G001400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.0e-61 240.0 233 53.6
Sabra07G0001200 Salix brachista HOM05D005772 ORTHO05D006468 4.5e-61 238.8 233 54.5
TWI18G0423 Tripterygium wilfordii HOM05D005772 ORTHO05D006468 1.6e-58 230.3 225 56.9
CiPaw.02G128300 Carya illinoinensis HOM05D005772 ORTHO05D006468 9.8e-56 221.1 223 53.8
CiPaw.01G207400 Carya illinoinensis HOM05D005772 ORTHO05D006468 2.0e-53 213.4 229 55.0
Cfa003428 Carpinus fangiana HOM05D005772 ORTHO05D006468 2.7e-53 213.0 229 51.5
QL06p046996 Quercus lobata HOM05D005772 ORTHO05D006468 5.0e-52 208.8 229 52.4
Ciclev10013938m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.5e-51 207.2 227 51.1
Ciclev10013939m.g Citrus clementina HOM05D005772 ORTHO05D006468 1.5e-51 207.2 227 51.1
Prupe.3G025100 Prunus persica HOM05D005772 ORTHO05D006468 1.5e-51 207.2 232 50.9
MD04G1024200 Malus domestica HOM05D005772 ORTHO05D006468 2.1e-50 203.4 232 49.1
PSO170G5960 Papaver somniferum HOM05D005772 ORTHO05D006468 2.3e-49 199.9 228 46.5
FAN09G4514 Fragaria x ananassa HOM05D005772 ORTHO05D006468 6.8e-49 198.4 234 48.7
Nn8g41076 Nelumbo nucifera HOM05D005772 ORTHO05D006468 6.8e-49 198.4 231 46.8
FAN02G1413 Fragaria x ananassa HOM05D005772 ORTHO05D006468 1.3e-47 194.1 234 48.3
Thecc.06G054300 Theobroma cacao HOM05D005772 ORTHO05D006468 2.2e-47 193.4 225 48.4
Ciclev10013941m.g Citrus clementina HOM05D005772 ORTHO05D006468 2.8e-47 193.0 227 50.2
RcHm_v2.0_Chr2g0149081 Rosa chinensis HOM05D005772 ORTHO05D006468 1.8e-46 190.3 234 47.9
FAN14G5951 Fragaria x ananassa HOM05D005772 ORTHO05D006468 2.4e-46 189.9 234 47.4
Aqoxy2G03016 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 3.5e-45 186.0 240 47.1
CSS0023973 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 3.5e-45 186.0 238 44.1
vmacro10401 Vaccinium macrocarpon HOM05D005772 ORTHO05D006468 3.5e-45 186.0 233 45.5
GSVIVG01029533001 Vitis vinifera HOM05D005956 ORTHO05D007197 3.5e-45 186.0 227 46.3
TAR625G1307 Trochodendron aralioides HOM05D005772 ORTHO05D006468 5.0e-44 182.2 235 47.2
PGR031G3661 Punica granatum HOM05D005772 ORTHO05D006468 1.9e-43 180.3 210 46.7
Lj3g0026748 Lotus japonicus HOM05D005772 ORTHO05D006468 2.5e-43 179.9 235 46.4
CSS0004874 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 6.8e-41 171.8 230 44.8
Potri.007G001650 Populus trichocarpa HOM05D005772 ORTHO05D006468 7.5e-40 168.3 123 61.8
Rhsim08G0251400 Rhododendron simsii HOM05D000927 ORTHO05D000850 3.7e-39 166.0 140 56.4
MBI06_g27497_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 4.1e-38 162.5 238 44.1
HPP92_009982 Vanilla planifolia HOM05D005772 ORTHO05D006468 1.2e-37 161.0 202 43.6
CANSAT01G3073 Cannabis sativa HOM05D005772 ORTHO05D006468 2.0e-37 160.2 242 42.1
PSO063G1689 Papaver somniferum HOM05D005772 ORTHO05D006468 3.5e-37 159.5 157 50.3
SHI31127 Sapria himalayana HOM05D005772 ORTHO05D006468 4.6e-37 159.1 301 36.5
Medtr0032s0080 Medicago truncatula HOM05D005772 ORTHO05D006468 1.1e-33 147.9 223 43.9
Haze_16205 Corylus avellana HOM05D005772 ORTHO05D006468 7.5e-32 141.7 177 48.0
Oeu038376.1 Olea europaea HOM05D005772 ORTHO05D006468 9.8e-32 141.4 174 43.7
CARHR072530 Cardamine hirsuta HOM05D005772 ORTHO05D006468 1.2e-29 134.4 212 40.1
A07p27410 Brassica napus HOM05D005772 ORTHO05D006468 3.0e-28 129.8 204 37.7
BraA07t30382Z Brassica rapa HOM05D005772 ORTHO05D006468 1.1e-27 127.9 204 38.2
Aa31LG4G2060 Aethionema arabicum HOM05D005772 ORTHO05D006468 3.3e-27 126.3 223 35.9
BcaB02g07187 Brassica carinata HOM05D005772 ORTHO05D006468 1.1e-25 121.3 196 37.2
C06p30330 Brassica napus HOM05D005772 ORTHO05D006468 5.2e-25 119.0 204 37.3
BolC6t38196H Brassica oleracea HOM05D005772 ORTHO05D006468 5.2e-25 119.0 204 37.3
FvH4_6g36610 Fragaria vesca HOM05D005772 ORTHO05D006468 6.8e-25 118.6 152 47.4
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 2.0e-24 117.1 128 47.7
Carub.0002s2577 Capsella rubella HOM05D005772 ORTHO05D006468 3.4e-24 116.3 212 35.8
THA.LOC104813627 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 7.5e-24 115.2 267 34.5
AT1G78922 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 6.4e-23 112.1 213 35.7
Sp5g33960 Schrenkiella parvula HOM05D005772 ORTHO05D006468 3.2e-22 109.8 202 37.1
Duzib192G0394 Durio zibethinus HOM05D005772 ORTHO05D006468 2.7e-21 106.7 128 46.9
QL06p047014 Quercus lobata HOM05D001071 ORTHO05D006468 2.7e-21 106.7 135 50.4
Atru.chr1.2602 Acer truncatum HOM05D005772 ORTHO05D006468 6.0e-21 105.5 146 42.5
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 2.3e-20 103.6 145 46.2
TPR.G38724 Trifolium pratense HOM05D003324 ORTHO05D006468 5.6e-19 99.0 192 39.1
TAR628G1655 Trochodendron aralioides HOM05D005772 ORTHO05D006468 7.3e-19 98.6 219 29.2
AL2G39360 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 3.6e-18 96.3 106 42.5
Nn5g28367 Nelumbo nucifera HOM05D005772 ORTHO05D006468 8.1e-18 95.1 231 31.2
Dinv20324 Davidia involucrata HOM05D005772 ORTHO05D006468 1.8e-17 94.0 223 37.7
MBI06_g44579_MAGBIO Magnolia biondii HOM05D005772 ORTHO05D006468 3.1e-17 93.2 189 29.1
Actinidia15231 Actinidia chinensis HOM05D005772 ORTHO05D006468 5.2e-17 92.4 172 35.5
arahy.Tifrunner.gnm1.ann1.B1JKF4 Arachis hypogaea HOM05D005772 ORTHO05D006468 5.2e-17 92.4 167 32.9
Gohir.D05G239100 Gossypium hirsutum HOM05D005772 ORTHO05D006468 7.6e-16 88.6 221 31.2
MD04G1024400 Malus domestica HOM05D005772 ORTHO05D006468 1.7e-15 87.4 99 50.5
Zm00001eb215960 Zea mays HOM05D046982 ORTHO05D006468 2.2e-15 87.0 142 37.3
Eucgr.A00749 Eucalyptus grandis HOM05D005772 ORTHO05D006468 2.9e-15 86.7 155 40.0
ClCG11G015880 Citrullus lanatus HOM05D005772 ORTHO05D006468 6.4e-15 85.5 155 33.5
CiPaw.16G025800 Carya illinoinensis HOM05D005772 ORTHO05D006468 8.4e-15 85.1 179 33.0
Phvul.007G102200 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 2.4e-14 83.6 189 33.9
Ciclev10003748m.g Citrus clementina HOM05D005772 ORTHO05D006468 4.1e-14 82.8 201 32.8
Psat5g087080 Pisum sativum HOM05D005772 ORTHO05D006468 4.1e-14 82.8 176 31.8
Gorai.009G247900 Gossypium raimondii HOM05D005772 ORTHO05D006468 5.4e-14 82.4 221 29.9
Cpa.g.sc64.117 Carica papaya HOM05D005772 ORTHO05D006468 7.1e-14 82.0 199 31.2
MELO3C010502.2 Cucumis melo HOM05D005772 ORTHO05D006468 7.1e-14 82.0 215 28.4
Actinidia21305 Actinidia chinensis HOM05D005772 ORTHO05D006468 1.6e-13 80.9 173 33.5
Thecc.08G129200 Theobroma cacao HOM05D005772 ORTHO05D006468 1.6e-13 80.9 224 28.1
Potri.005G180400 Populus trichocarpa HOM05D005772 ORTHO05D006468 2.1e-13 80.5 172 32.0
VMungo1309G2764 Vigna mungo HOM05D005772 ORTHO05D006468 2.7e-13 80.1 181 29.8
Phvul.009G125600 Phaseolus vulgaris HOM05D005772 ORTHO05D006468 3.5e-13 79.7 184 29.9
Migut.E01717 Erythranthe guttata HOM05D005772 ORTHO05D006468 4.6e-13 79.3 139 36.0
Gohir.A05G237000 Gossypium hirsutum HOM05D005772 ORTHO05D006468 7.8e-13 78.6 221 29.0
Migut.C01111 Erythranthe guttata HOM05D005772 ORTHO05D006468 1.0e-12 78.2 243 30.5
DCAR_003562 Daucus carota HOM05D005772 ORTHO05D006468 2.3e-12 77.0 123 35.0
GSVIVG01008837001 Vitis vinifera HOM05D005772 ORTHO05D006468 2.3e-12 77.0 155 31.0
Migut.E00857 Erythranthe guttata HOM05D005772 ORTHO05D006468 3.9e-12 76.3 139 36.0
TPR.G21059 Trifolium pratense HOM05D005772 ORTHO05D006468 3.9e-12 76.3 215 28.8
CsaV3_4G028090 Cucumis sativus L. HOM05D005772 ORTHO05D006468 6.6e-12 75.5 215 26.5
arahy.Tifrunner.gnm1.ann1.AWF3QX Arachis hypogaea HOM05D005772 ORTHO05D006468 8.7e-12 75.1 230 27.0
Duzib093G1216 Durio zibethinus HOM05D005772 ORTHO05D006468 1.5e-11 74.3 175 30.3
Glyma.04G249200 Glycine max HOM05D005772 ORTHO05D006468 1.5e-11 74.3 190 28.4
Glyma.06G113802 Glycine max HOM05D005772 ORTHO05D006468 1.5e-11 74.3 117 34.2
CANSAT64G1440 Cannabis sativa HOM05D005772 ORTHO05D006468 2.5e-11 73.6 199 27.1
Lalb_Chr08g0241421 Lupinus albus HOM05D005772 ORTHO05D006468 2.5e-11 73.6 210 29.0
QL09p033796 Quercus lobata HOM05D005772 ORTHO05D006468 3.3e-11 73.2 243 28.0
Manes.02G166200 Manihot esculenta HOM05D005772 ORTHO05D006468 7.3e-11 72.0 220 30.9
SGA_v2.0_scaffold52G18944 Striga asiatica HOM05D005772 ORTHO05D006468 1.2e-10 71.2 241 27.0
Nitab4.5_0000111g0180 Nicotiana tabacum HOM05D005772 ORTHO05D006468 2.1e-10 70.5 168 30.4
CARHR022100 Cardamine hirsuta HOM05D005772 ORTHO05D006468 3.6e-10 69.7 118 30.5
THA.LOC104800210 Tarenaya hassleriana HOM05D005772 ORTHO05D006468 6.2e-10 68.9 125 31.2
AL1G34900 Arabidopsis lyrata HOM05D005772 ORTHO05D006468 1.4e-09 67.8 118 29.7
Lj4A634T17 Lonicera japonica HOM05D005772 ORTHO05D006468 6.9e-09 65.5 172 29.7
Aqoxy6G00258 Aquilegia oxysepala HOM05D005772 ORTHO05D006468 9.0e-09 65.1 149 32.9
Carub.0001s2117 Capsella rubella HOM05D005772 ORTHO05D006468 1.2e-08 64.7 119 26.1
Hma1.2p1_0612F.1_g188830 Hydrangea macrophylla HOM05D005772 ORTHO05D006468 2.0e-08 63.9 205 28.8
CSS0028957 Camellia sinensis var. sinensis HOM05D005772 ORTHO05D006468 2.6e-08 63.5 166 26.5
Cc10_g12210 Coffea canephora HOM05D005772 ORTHO05D006468 2.6e-08 63.5 118 30.5
Lj1g0001548 Lotus japonicus HOM05D005772 ORTHO05D006468 2.6e-08 63.5 218 28.0
SalBow5G3743 Salvia bowleyana HOM05D005772 ORTHO05D006468 5.8e-08 62.4 88 36.4
PGR042G3290 Punica granatum HOM05D005772 ORTHO05D006468 7.6e-08 62.0 232 26.7
A07p14940 Brassica napus HOM05D005772 ORTHO05D006468 9.9e-08 61.6 127 32.3
Dinv27285 Davidia involucrata HOM05D005772 ORTHO05D006468 9.9e-08 61.6 169 27.8
Thhalv10008678m.g Eutrema salsugineum HOM05D005772 ORTHO05D006468 9.9e-08 61.6 214 24.8
AT1G21722 Arabidopsis thaliana HOM05D005772 ORTHO05D006468 1.3e-07 61.2 118 28.0
SalBow5G0344 Salvia bowleyana HOM05D005772 ORTHO05D006468 1.7e-07 60.8 65 41.5
AUR62026712 Chenopodium quinoa HOM05D050369 ORTHO05D006468 2.4e-06 57.0 57 47.4
Aa31LG7G5690 Aethionema arabicum HOM05D002121 ORTHO05D004000 9.3e-06 55.1 94 33.0


User provided reference genes

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