Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 5.6e-199 697.6 399 100.0
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 2.2e-147 526.2 397 73.0
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 3.6e-145 518.8 400 72.5
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 4.0e-136 488.8 455 63.3
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 9.1e-133 477.6 464 62.7
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 1.1e-130 470.7 399 67.4
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 5.5e-130 468.4 399 69.4
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 9.4e-130 467.6 399 67.4
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.6e-129 466.8 399 68.7
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.1e-129 466.5 399 67.4
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 1.4e-128 463.8 417 63.8
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 4.0e-128 462.2 399 67.2
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 6.3e-126 454.9 401 66.3
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 6.6e-123 444.9 407 63.1
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.1e-122 444.1 397 64.2
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 2.5e-122 443.0 384 64.8
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 2.1e-121 439.9 400 67.0
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.2e-119 434.1 399 61.9
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.0e-119 433.3 410 60.0
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 2.2e-118 429.9 464 57.8
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 2.2e-118 429.9 409 66.5
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 3.2e-117 426.0 399 64.4
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 3.2e-117 426.0 406 64.8
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 7.0e-117 424.9 397 64.0
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.2e-116 424.1 469 55.2
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 1.6e-116 423.7 397 62.0
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 3.5e-116 422.5 402 61.7
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.7e-115 420.2 403 62.5
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 2.9e-115 419.5 401 62.3
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 5.0e-115 418.7 400 59.2
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 6.6e-115 418.3 401 58.9
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.1e-114 417.5 397 64.0
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.9e-114 416.8 397 62.0
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 2.5e-114 416.4 371 67.1
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 7.3e-114 414.8 397 61.7
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.6e-113 413.7 382 65.4
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 1.4e-112 410.6 400 65.2
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 8.9e-112 407.9 395 63.3
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 1.2e-111 407.5 378 61.6
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 1.5e-111 407.1 415 60.5
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 4.4e-111 405.6 380 62.4
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 4.4e-111 405.6 402 62.2
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 9.8e-111 404.4 380 61.6
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 1.3e-110 404.1 394 62.7
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 1.7e-110 403.7 402 63.4
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 4.9e-110 402.1 382 61.3
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 4.1e-109 399.1 395 62.3
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 7.0e-109 398.3 378 61.1
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 9.2e-109 397.9 400 60.0
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 1.2e-108 397.5 382 61.8
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.6e-108 397.1 382 58.9
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.7e-108 396.4 401 57.1
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 1.0e-107 394.4 403 59.8
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 1.3e-107 394.0 379 60.4
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 3.9e-107 392.5 382 60.5
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 3.9e-107 392.5 395 55.7
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 5.0e-107 392.1 383 62.9
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 5.0e-107 392.1 381 63.3
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.1e-106 391.0 387 61.5
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 3.3e-106 389.4 400 61.5
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 1.2e-105 387.5 398 57.5
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 1.6e-105 387.1 370 63.0
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 1.1e-104 384.4 388 61.6
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 1.8e-104 383.6 377 56.5
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 2.3e-104 383.3 395 58.7
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 2.3e-104 383.3 411 59.4
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 5.2e-104 382.1 397 57.7
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.2e-103 380.9 398 56.3
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.2e-103 380.9 397 60.7
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 7.5e-103 378.3 403 60.0
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.3e-102 377.5 373 61.1
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 2.2e-102 376.7 399 58.9
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.1e-101 374.4 382 56.8
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.4e-101 374.0 380 60.3
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 1.4e-101 374.0 425 52.9
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 7.1e-101 371.7 396 55.1
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 1.2e-100 370.9 397 55.4
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 1.2e-100 370.9 416 56.2
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 1.6e-100 370.5 397 55.7
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.9e-99 365.9 407 54.5
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 1.1e-98 364.4 401 55.4
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 1.9e-98 363.6 398 56.0
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 2.5e-98 363.2 400 52.8
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 3.3e-98 362.8 341 62.5
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 4.3e-98 362.5 386 54.4
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 9.5e-98 361.3 363 61.4
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 5.2e-96 355.5 382 53.1
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 9.9e-95 351.3 365 59.5
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 3.7e-94 349.4 397 50.6
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 8.4e-94 348.2 401 52.6
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 1.4e-93 347.4 413 49.2
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 5.4e-93 345.5 376 54.0
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 9.2e-93 344.7 404 50.0
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 1.2e-92 344.4 473 52.6
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 1.7e-91 340.5 397 61.0
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 6.6e-91 338.6 398 59.5
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.1e-90 337.8 392 54.8
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.9e-90 337.0 380 49.7
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 1.9e-90 337.0 336 58.9
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 1.9e-90 337.0 409 49.4
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 7.6e-87 325.1 623 37.7
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.2e-79 301.2 399 49.9
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 8.7e-75 285.0 380 47.9
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 2.8e-73 280.0 397 44.1
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.5e-69 265.8 164 79.3
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 2.6e-63 246.9 142 83.8
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.0e-59 235.0 297 54.9
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 4.1e-56 223.0 135 77.0
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 5.5e-53 212.6 359 39.3
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 1.1e-48 198.4 405 39.3
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 2.7e-44 183.7 379 32.7
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 1.7e-41 174.5 114 75.4
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 3.7e-41 173.3 388 30.4
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 8.2e-41 172.2 398 32.2
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 1.9e-29 134.4 228 32.9
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.6e-28 131.3 103 68.0
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 4.1e-24 116.7 241 38.2
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 7.0e-24 115.9 182 36.3
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 3.5e-23 113.6 58 93.1
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.0e-22 109.8 82 68.3
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 6.5e-22 109.4 85 63.5
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 3.0e-19 100.5 224 29.5
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 9.8e-18 95.5 170 34.1
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 1.3e-17 95.1 55 78.2
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 9.1e-16 89.0 59 72.9


User provided reference genes

Program Settings