Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1596.6 784 100.0
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1110.9 944 63.1
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 3.3e-280 968.4 942 55.9
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 2.2e-279 965.7 945 55.8
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 6.6e-268 927.5 946 53.2
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 6.6e-268 927.5 947 53.6
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 1.2e-253 880.2 944 51.8
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 3.6e-250 868.6 941 51.0
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 1.2e-248 863.6 914 52.7
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 4.1e-246 855.1 947 49.8
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 1.7e-244 849.7 952 50.4
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 6.6e-244 847.8 941 50.4
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 4.3e-243 845.1 882 53.9
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 6.2e-242 841.3 951 49.0
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 6.8e-241 837.8 921 51.2
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.2e-240 837.0 952 48.6
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 2.0e-240 836.3 952 48.5
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.4e-240 835.1 949 48.6
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 5.8e-240 834.7 940 49.3
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 2.4e-238 829.3 954 48.8
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 2.4e-238 829.3 942 49.8
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.8e-234 815.8 974 47.3
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 1.8e-233 813.1 924 49.8
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.4e-232 808.9 924 49.6
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 2.7e-229 799.3 986 47.1
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 1.1e-222 777.3 835 50.8
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 9.3e-222 774.2 934 48.5
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 1.3e-220 770.4 940 46.0
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 1.7e-220 770.0 947 46.0
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 6.2e-218 761.5 941 45.4
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 1.4e-217 760.4 946 46.0
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 5.3e-217 758.4 938 45.3
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 1.2e-216 757.3 941 46.0
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 1.4e-214 750.4 940 44.9
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 2.4e-214 749.6 820 49.8
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 3.2e-214 749.2 931 45.3
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 3.2e-214 749.2 792 51.1
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 1.8e-212 743.4 943 45.5
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 6.7e-212 741.5 943 45.3
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 2.5e-211 739.6 936 45.4
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 1.1e-209 734.2 944 44.3
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 9.0e-209 731.1 936 44.1
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 2.6e-208 729.6 944 44.4
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 8.4e-207 724.5 733 52.4
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.1e-205 719.9 950 44.8
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 2.7e-205 719.5 951 44.7
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 3.5e-205 719.2 948 43.9
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 6.2e-202 708.4 888 46.1
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 8.2e-202 708.0 888 47.1
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 1.1e-198 697.6 950 42.7
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 3.2e-198 696.0 863 46.5
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 4.2e-198 695.7 943 43.2
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 4.2e-198 695.7 938 43.5
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 9.7e-195 684.5 940 43.5
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 1.6e-194 683.7 929 44.1
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 1.6e-194 683.7 948 43.1
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 4.8e-194 682.2 927 43.3
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 8.2e-194 681.4 758 48.8
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 2.4e-193 679.9 712 51.1
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 3.4e-192 676.0 909 43.5
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 3.4e-192 676.0 913 44.1
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 1.7e-191 673.7 937 42.6
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 2.2e-191 673.3 942 42.8
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 7.9e-189 664.8 720 49.9
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 7.9e-189 664.8 905 41.5
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 3.0e-188 662.9 945 42.0
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 2.0e-187 660.2 945 41.8
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.5e-187 659.8 920 43.6
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 4.8e-186 655.6 901 43.2
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 9.1e-185 651.4 775 47.4
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 9.1e-185 651.4 775 47.4
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 2.0e-184 650.2 855 44.3
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 4.2e-182 642.5 888 41.9
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 3.9e-180 636.0 888 41.8
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 6.7e-180 635.2 902 40.9
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 6.1e-173 612.1 878 42.0
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 5.2e-172 609.0 924 41.5
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 5.2e-172 609.0 875 42.3
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 2.2e-167 593.6 718 45.5
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 2.9e-167 593.2 896 41.5
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.5e-166 590.1 932 39.1
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.7e-165 586.6 753 44.5
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 2.7e-160 570.1 776 43.0
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.5e-158 564.3 957 37.4
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 1.0e-156 558.1 605 49.8
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 7.7e-152 542.0 872 38.1
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.7e-151 540.8 602 49.5
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.0e-143 515.0 773 41.4
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 1.2e-133 481.5 878 35.5
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 8.6e-127 458.8 600 43.5
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.2e-120 438.3 469 51.8
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.0e-115 421.0 432 50.9
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.9e-113 414.5 568 40.7
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 9.0e-108 395.6 489 46.2
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 2.0e-107 394.4 568 42.6
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.9e-105 387.9 982 29.9
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.6e-99 367.5 411 50.9
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.9e-87 327.0 487 41.3
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 2.3e-79 301.2 379 44.1
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 3.7e-69 267.3 498 35.9
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 8.5e-66 256.1 824 27.4
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 4.2e-65 253.8 303 46.2
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.2e-61 241.5 262 54.2
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 2.6e-59 234.6 257 54.9
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 3.0e-47 194.5 233 49.4
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 7.5e-38 163.3 243 41.6
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.6e-30 138.3 172 47.1
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.4e-28 132.5 201 41.3
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 4.6e-27 127.5 314 30.3
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 2.6e-22 111.7 98 57.1
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 4.6e-19 100.9 217 34.6
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 6.0e-19 100.5 106 50.9
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 7.8e-19 100.1 81 65.4
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 7.3e-17 93.6 209 33.0
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 7.5e-14 83.6 81 56.8
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 4.6e-11 74.3 68 57.4
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 2.3e-10 72.0 113 42.5
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 3.9e-10 71.2 93 48.4
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 6.6e-10 70.5 55 58.2


User provided reference genes

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