Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 4.4e-213 744.6 441 100.0
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 4.3e-160 568.5 424 79.5
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 6.3e-159 564.7 466 78.1
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 1.5e-152 543.5 446 78.7
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 8.2e-151 537.7 286 88.1
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 2.4e-150 536.2 281 88.3
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 2.4e-150 536.2 285 88.8
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.2e-149 533.9 283 88.3
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.7e-148 530.0 285 87.4
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.7e-148 530.0 285 87.4
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.4e-147 526.9 283 86.2
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 4.2e-147 525.4 411 81.5
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 9.4e-147 524.2 453 60.9
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 2.1e-146 523.1 286 85.0
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 4.7e-146 521.9 284 87.0
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 8.0e-146 521.2 283 85.2
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 6.7e-145 518.1 285 84.6
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 9.7e-144 514.2 285 84.6
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 2.8e-143 512.7 459 75.4
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 8.2e-143 511.1 284 82.7
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 8.2e-143 511.1 265 88.3
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 8.2e-143 511.1 263 89.0
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.1e-142 510.8 278 83.8
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.1e-142 510.8 287 82.9
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 1.1e-142 510.8 453 60.0
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 3.1e-142 509.2 283 82.0
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 4.1e-142 508.8 285 82.1
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 5.3e-142 508.4 288 81.6
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 3.5e-141 505.8 263 88.2
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 7.7e-141 504.6 276 84.4
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.0e-140 504.2 284 81.7
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.3e-140 503.8 285 82.5
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 1.7e-140 503.4 275 84.0
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.2e-140 503.1 287 82.2
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 2.2e-140 503.1 285 82.1
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 1.5e-139 500.4 262 86.6
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 1.9e-139 500.0 262 86.3
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 2.5e-139 499.6 283 81.6
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 5.5e-139 498.4 283 80.6
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 7.2e-139 498.0 262 86.3
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 9.4e-139 497.7 299 78.3
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.1e-138 496.5 260 86.9
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 2.1e-138 496.5 287 82.6
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 4.7e-138 495.4 287 82.2
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 4.7e-138 495.4 284 78.9
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 6.1e-138 495.0 283 80.6
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.4e-137 493.8 259 87.3
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 1.4e-137 493.8 292 78.8
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 1.8e-137 493.4 259 87.3
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 2.3e-137 493.0 283 79.5
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.0e-137 492.3 275 82.2
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 5.2e-137 491.9 253 87.0
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 5.2e-137 491.9 259 87.6
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 8.8e-137 491.1 259 86.5
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 1.5e-136 490.3 276 80.8
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 2.0e-136 490.0 277 83.0
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 2.6e-136 489.6 268 84.3
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 2.6e-136 489.6 266 84.6
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 7.5e-136 488.0 260 85.4
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 1.7e-135 486.9 259 87.3
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 1.7e-135 486.9 253 87.4
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 1.7e-135 486.9 265 84.9
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.7e-135 486.9 253 87.0
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 2.2e-135 486.5 253 86.6
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.4e-134 483.8 266 84.2
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-134 483.8 276 81.9
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.4e-134 483.0 253 86.6
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 9.1e-134 481.1 253 86.2
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 1.2e-133 480.7 259 84.9
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.7e-133 479.6 285 77.5
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 3.5e-133 479.2 284 77.1
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 7.7e-133 478.0 259 85.3
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 7.7e-133 478.0 277 80.5
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 1.0e-132 477.6 259 83.4
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.3e-132 477.2 279 77.8
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.7e-132 476.9 284 76.8
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 2.2e-132 476.5 294 77.2
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 2.2e-132 476.5 259 84.6
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 2.2e-132 476.5 280 77.5
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 8.5e-132 474.6 287 77.7
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.1e-131 474.2 286 76.6
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 7.2e-131 471.5 269 82.2
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 2.7e-130 469.5 288 75.7
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 2.7e-130 469.5 259 83.0
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 3.6e-130 469.2 240 89.2
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 6.1e-130 468.4 286 76.9
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.0e-129 467.6 280 75.7
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 1.4e-129 467.2 259 83.0
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 6.8e-129 464.9 285 76.5
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.3e-127 460.7 283 74.2
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 3.7e-127 459.1 292 74.7
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 4.8e-127 458.8 286 76.2
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 1.1e-126 457.6 261 80.8
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.4e-126 457.2 346 66.2
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 3.1e-126 456.1 260 80.0
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.1e-126 456.1 270 78.5
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 4.1e-126 455.7 261 79.7
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 2.0e-125 453.4 252 82.9
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 2.0e-125 453.4 256 78.1
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 3.5e-125 452.6 289 75.8
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 1.5e-123 447.2 440 55.0
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 5.5e-123 445.3 240 85.0
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 9.5e-123 444.5 261 76.6
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.8e-122 443.0 286 74.8
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 1.7e-119 433.7 449 53.5
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.8e-119 433.0 303 69.6
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.8e-118 430.3 237 84.8
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 9.2e-118 427.9 296 70.3
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 3.5e-117 426.0 279 72.8
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 5.6e-115 418.7 255 76.1
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 4.7e-114 415.6 237 82.3
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 1.0e-113 414.5 313 62.9
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 2.7e-109 399.8 263 73.8
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 1.7e-108 397.1 267 69.7
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 3.6e-106 389.4 201 85.6
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 1.3e-103 380.9 211 78.7
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.1e-99 367.9 184 90.2
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 1.8e-97 360.5 289 59.9
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.0e-96 357.1 298 57.7
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 6.4e-95 352.1 303 55.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 7.3e-91 338.6 275 60.7
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 2.1e-90 337.0 177 88.7
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.0e-89 332.8 195 79.5
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 3.4e-88 329.7 197 79.7
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 9.9e-88 328.2 173 87.3
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 9.9e-88 328.2 173 87.3
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 2.7e-85 320.1 245 62.9
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 7.8e-85 318.5 173 84.4
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.0e-84 318.2 205 76.6
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 3.9e-84 316.2 274 57.7
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 2.1e-82 310.5 193 76.7
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 2.6e-80 303.5 270 57.4
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 3.9e-76 289.7 270 55.9
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 9.6e-75 285.0 204 69.1
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 2.1e-69 267.3 242 55.4
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.9e-68 263.1 280 49.3
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 2.8e-66 256.9 232 54.3
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 1.3e-63 248.1 251 49.4
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 3.8e-63 246.5 219 57.1
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.5e-59 234.6 203 59.6
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 9.0e-57 225.3 151 73.5
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 5.8e-56 222.6 230 52.6
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 2.2e-55 220.7 140 77.1
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 6.5e-55 219.2 136 78.7
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 2.5e-54 217.2 194 54.6
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 7.4e-51 205.7 223 48.4
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 5.5e-46 189.5 249 43.4
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 7.9e-45 185.7 170 54.1
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 7.7e-40 169.1 128 61.7
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 1.0e-39 168.7 124 61.3
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 2.7e-37 160.6 84 81.0
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-29 135.2 79 74.7
unitig_60.g25645 Utricularia gibba HOM05D004797 ORTHO05D005752 1.8e-17 94.7 48 83.3
QL06p032345 Quercus lobata HOM05D004797 ORTHO05D050637 4.1e-17 93.6 50 78.0
QL93p0275_0020 Quercus lobata HOM05D004797 ORTHO05D050637 4.1e-17 93.6 50 78.0
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 5.0e-07 60.1 165 27.9
Cfa024013 Carpinus fangiana HOM05D040201 ORTHO05D034153 1.5e-06 58.5 141 29.1


User provided reference genes

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