Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 2.2e-185 652.1 326 100.0
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 3.1e-155 552.0 358 80.2
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 1.8e-142 509.6 367 73.6
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 1.8e-139 499.6 358 72.6
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 5.9e-138 494.6 358 74.3
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 2.9e-137 492.3 372 72.3
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 7.2e-136 487.6 368 69.8
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.1e-135 486.1 350 72.9
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 2.1e-135 486.1 350 72.9
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 2.1e-135 486.1 350 72.9
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 3.6e-135 485.3 359 72.1
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 3.6e-135 485.3 369 69.6
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 6.1e-135 484.6 359 71.9
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 6.1e-135 484.6 335 75.5
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 4.0e-134 481.9 363 71.1
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 4.0e-134 481.9 353 73.4
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 5.2e-134 481.5 335 75.2
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 6.7e-134 481.1 332 75.0
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 1.3e-132 476.9 326 76.1
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.7e-132 476.5 333 74.8
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 2.2e-132 476.1 332 75.6
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 2.2e-132 476.1 361 71.5
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 8.2e-132 474.2 302 79.8
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.4e-131 472.6 335 72.8
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 2.4e-131 472.6 372 70.2
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.2e-130 470.3 354 71.5
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.6e-130 469.9 326 75.5
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 5.9e-130 468.0 368 67.4
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 7.7e-130 467.6 276 85.9
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 7.7e-130 467.6 370 68.6
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 2.9e-129 465.7 295 80.7
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 3.8e-129 465.3 322 74.5
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 5.5e-128 461.5 370 68.1
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 9.4e-128 460.7 366 68.0
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 1.6e-127 459.9 333 72.7
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 3.6e-127 458.8 333 72.7
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 3.6e-127 458.8 363 67.8
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 4.7e-127 458.4 357 67.2
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.4e-126 456.8 369 67.8
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.4e-126 456.8 390 65.1
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 1.4e-126 456.8 369 68.0
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.3e-126 456.1 390 65.1
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 4.0e-126 455.3 339 72.9
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 8.8e-126 454.1 302 76.2
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 1.2e-125 453.8 329 71.7
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 1.5e-125 453.4 467 57.8
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 3.4e-125 452.2 362 68.8
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 2.2e-124 449.5 332 70.2
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 2.2e-124 449.5 386 65.0
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 2.8e-124 449.1 361 67.0
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 2.8e-124 449.1 363 66.7
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 1.1e-123 447.2 339 71.7
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 2.4e-123 446.0 359 66.6
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 5.4e-123 444.9 274 80.3
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 7.0e-123 444.5 340 71.5
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 1.2e-122 443.7 358 66.8
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.6e-122 443.4 272 79.8
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 4.5e-122 441.8 360 66.4
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 5.0e-121 438.3 378 63.8
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 6.5e-121 438.0 350 67.1
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 6.5e-121 438.0 332 70.2
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.1e-120 437.2 347 68.0
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.9e-120 436.4 341 70.7
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 2.5e-120 436.0 305 74.8
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.1e-119 433.0 360 64.2
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 2.8e-119 432.6 325 70.5
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 3.6e-119 432.2 325 69.5
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 3.6e-119 432.2 355 67.3
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 3.6e-119 432.2 360 65.3
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 8.0e-119 431.0 360 65.0
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 2.3e-118 429.5 358 66.2
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 3.0e-118 429.1 356 64.0
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 5.2e-118 428.3 288 74.7
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 5.2e-118 428.3 363 63.4
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 6.8e-118 427.9 291 74.2
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 1.2e-117 427.2 287 75.6
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 2.0e-117 426.4 337 68.8
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 3.4e-117 425.6 264 80.3
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 4.4e-117 425.2 344 66.6
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 5.7e-117 424.9 298 74.2
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 9.8e-117 424.1 303 72.3
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 2.2e-116 422.9 310 71.3
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 2.2e-116 422.9 343 66.2
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 8.3e-116 421.0 292 74.0
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 1.4e-115 420.2 322 68.6
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 3.1e-115 419.1 327 67.6
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.2e-114 417.2 321 68.8
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 7.8e-114 414.5 316 67.4
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 1.3e-113 413.7 316 67.4
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.1e-112 410.6 290 74.1
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 9.5e-112 407.5 289 72.7
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 8.0e-111 404.4 327 64.5
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 8.0e-111 404.4 341 64.8
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 1.8e-110 403.3 269 75.8
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 4.4e-109 398.7 343 63.3
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 5.7e-109 398.3 270 74.4
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 9.8e-109 397.5 271 74.5
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.7e-108 396.7 312 66.7
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 2.9e-108 396.0 363 59.5
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 2.9e-108 396.0 331 64.0
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.9e-108 395.2 337 65.9
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 5.4e-107 391.7 299 68.2
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 9.2e-107 391.0 341 63.3
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.0e-105 386.0 332 62.3
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 6.6e-105 384.8 349 59.0
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 8.6e-105 384.4 259 71.8
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 2.5e-104 382.9 275 68.4
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 9.5e-104 380.9 347 60.8
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.6e-103 380.2 275 69.5
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 1.6e-103 380.2 275 68.0
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 3.6e-103 379.0 327 62.7
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 8.0e-103 377.9 328 62.2
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 4.0e-102 375.6 358 57.8
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 4.0e-102 375.6 328 61.9
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 5.2e-102 375.2 328 61.9
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 5.2e-102 375.2 326 62.9
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 5.2e-102 375.2 323 63.8
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 1.2e-101 374.0 366 57.7
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 3.4e-101 372.5 345 60.9
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 7.5e-101 371.3 344 60.8
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 7.5e-101 371.3 344 60.8
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 9.8e-101 370.9 345 60.9
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 1.7e-100 370.2 328 62.5
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 1.9e-99 366.7 316 62.7
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 1.9e-99 366.7 316 62.7
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 5.4e-99 365.2 341 55.4
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.6e-98 363.6 319 62.4
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 2.7e-98 362.8 336 60.4
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 6.0e-98 361.7 330 60.3
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 3.0e-97 359.4 265 69.8
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 2.5e-96 356.3 283 68.2
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.2e-95 354.0 233 77.7
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 1.6e-95 353.6 329 60.5
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 1.3e-92 344.0 325 58.2
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 1.2e-87 327.4 259 66.4
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 2.4e-86 323.2 325 56.6
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.1e-86 322.8 224 75.0
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 4.0e-86 322.4 293 62.1
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 1.5e-85 320.5 213 75.6
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 5.8e-85 318.5 212 77.4
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 6.0e-82 308.5 216 74.5
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 1.3e-81 307.4 203 79.3
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 3.0e-81 306.2 294 59.9
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 4.7e-79 298.9 263 57.8
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 2.9e-76 289.7 291 52.2
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 2.4e-75 286.6 251 63.7
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 9.3e-75 284.6 292 52.1
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 9.6e-72 274.6 240 56.7
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 8.1e-71 271.6 263 54.8
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 8.1e-63 245.0 203 65.0
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 4.0e-62 242.7 218 60.6
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 5.6e-56 222.2 270 45.2
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 8.4e-52 208.4 143 76.9
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 1.7e-44 184.1 128 71.1
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 7.4e-40 168.7 90 87.8
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 7.4e-32 142.1 108 69.4
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 8.2e-31 138.7 133 57.1
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 2.1e-26 124.0 75 78.7
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 4.7e-26 122.9 132 54.5
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.3e-23 114.8 92 59.8
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 5.3e-22 109.4 239 29.7
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 8.0e-18 95.5 334 25.7


User provided reference genes

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