Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.1e-127 459.9 229 100.0
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 9.6e-111 403.7 229 90.0
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.1e-105 386.0 229 83.4
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 9.6e-103 377.1 229 82.1
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.4e-100 368.6 229 82.1
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.3e-99 366.7 229 79.5
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 4.9e-99 364.8 228 79.4
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 4.2e-98 361.7 229 79.0
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.7e-97 359.0 229 78.2
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 7.9e-97 357.5 229 78.6
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 3.3e-95 352.1 228 76.8
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 7.4e-95 350.9 229 76.9
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.3e-94 350.1 229 76.4
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.6e-94 349.7 229 76.0
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 2.4e-93 345.9 229 76.9
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 4.1e-93 345.1 231 75.8
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.5e-92 343.2 229 76.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 3.4e-92 342.0 231 76.2
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.9e-92 341.3 229 73.8
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 7.7e-92 340.9 230 75.2
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 7.7e-92 340.9 230 75.2
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.0e-91 340.5 231 75.3
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.7e-91 339.7 231 75.8
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.7e-91 339.7 231 75.8
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 1.7e-91 339.7 230 75.2
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.8e-91 338.6 230 74.8
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.5e-91 337.8 230 74.3
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.1e-90 337.0 229 76.4
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-90 336.7 230 74.3
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 5.5e-90 334.7 230 74.8
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.1e-89 332.8 229 73.8
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 4.6e-89 331.6 229 73.4
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 6.1e-89 331.3 233 76.0
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 7.9e-89 330.9 230 74.3
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 2.3e-88 329.3 229 75.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 3.0e-88 328.9 231 74.9
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.7e-88 327.8 225 72.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.1e-87 327.0 229 74.2
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.3e-86 323.6 229 73.8
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 4.8e-86 321.6 230 73.5
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 8.2e-86 320.9 229 69.4
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.1e-85 318.9 230 71.3
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 4.1e-85 318.5 238 69.3
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 5.9e-84 314.7 229 71.2
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 6.5e-83 311.2 232 69.8
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 2.5e-82 309.3 236 69.1
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 9.4e-82 307.4 232 67.2
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.0e-80 303.9 232 67.2
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.4e-80 303.5 230 70.4
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 3.9e-80 302.0 222 65.8
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.1e-79 300.4 230 70.0
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.1e-79 300.4 229 65.9
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.5e-79 300.1 230 70.0
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.0e-79 299.7 229 67.2
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.6e-79 299.3 230 66.5
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 3.3e-79 298.9 234 67.9
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 4.4e-79 298.5 235 67.7
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 5.7e-79 298.1 232 66.4
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.3e-78 297.0 233 64.4
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.2e-78 296.2 235 65.1
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.1e-77 293.9 229 66.4
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.4e-77 293.5 216 66.7
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.3e-77 291.6 232 66.4
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 5.3e-77 291.6 229 66.8
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.2e-76 290.4 233 63.9
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 4.5e-76 288.5 230 68.3
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 5.9e-76 288.1 233 66.1
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 3.8e-75 285.4 232 65.1
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 6.5e-75 284.6 218 67.0
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 8.5e-75 284.3 232 63.4
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.5e-74 282.7 171 80.7
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.2e-74 282.0 218 65.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 9.4e-74 280.8 218 65.6
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 2.1e-73 279.6 229 62.9
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.7e-73 279.3 229 63.8
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 6.1e-73 278.1 229 63.8
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 8.0e-73 277.7 230 63.5
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.3e-72 276.2 229 62.4
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.0e-72 275.8 189 74.6
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 8.8e-72 274.2 233 64.4
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.3e-71 272.3 231 61.9
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 4.4e-71 271.9 229 62.9
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 9.7e-71 270.8 226 63.7
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.8e-70 269.2 232 61.2
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.7e-70 268.9 218 67.4
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.1e-69 267.3 231 62.3
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.1e-69 267.3 246 57.7
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.8e-69 266.5 229 60.7
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.8e-69 266.5 225 63.1
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.4e-69 266.2 232 61.6
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.4e-69 266.2 225 63.1
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 9.1e-69 264.2 230 61.3
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.0e-68 263.1 232 59.5
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.6e-68 262.7 230 60.9
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.6e-68 262.7 225 61.3
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.6e-68 262.7 231 64.5
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 1.7e-67 260.0 229 61.6
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 1.7e-67 260.0 229 61.6
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.9e-66 256.5 229 59.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.5e-66 256.1 224 62.1
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 4.2e-66 255.4 228 56.6
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 5.5e-66 255.0 229 59.4
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 5.5e-66 255.0 229 59.0
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 5.5e-66 255.0 229 59.4
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 9.4e-66 254.2 229 60.7
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.1e-65 253.1 223 59.2
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 3.6e-65 252.3 226 58.0
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 6.1e-65 251.5 228 57.5
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.4e-64 250.4 187 69.0
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.3e-64 249.6 218 62.4
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 5.2e-64 248.4 229 61.6
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 6.8e-64 248.1 229 61.6
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.6e-63 246.1 223 57.8
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.6e-63 246.1 243 55.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.6e-63 246.1 219 58.4
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 5.7e-63 245.0 224 58.0
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 5.7e-63 245.0 229 59.0
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 7.5e-63 244.6 229 59.0
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.3e-62 243.8 232 59.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.2e-62 243.0 261 55.9
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 2.8e-62 242.7 221 58.4
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 3.7e-62 242.3 221 57.5
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 8.3e-62 241.1 224 58.9
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-61 239.2 229 59.0
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 2.0e-60 236.5 240 56.2
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 3.5e-60 235.7 226 54.0
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.5e-60 235.7 150 76.0
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.3e-59 233.8 227 52.4
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.2e-59 233.0 233 58.8
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 3.8e-59 232.3 240 55.0
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.0e-59 231.9 251 53.8
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 5.0e-59 231.9 205 61.5
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.7e-57 225.3 231 54.5
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.1e-57 224.9 222 53.2
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.0e-56 224.2 222 51.8
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.0e-56 224.2 224 54.0
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.8e-56 223.4 230 56.5
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.8e-56 223.4 221 53.8
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.3e-56 223.0 207 54.1
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.0e-56 222.6 221 52.5
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.0e-56 222.2 228 51.8
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.8e-56 221.5 224 52.7
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 8.8e-56 221.1 222 51.4
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 2.0e-55 219.9 241 51.9
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 5.7e-55 218.4 229 54.1
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.3e-54 217.2 206 58.7
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.2e-52 210.7 140 70.7
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.5e-52 209.1 191 56.5
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.3e-51 206.5 208 52.4
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.8e-51 205.7 171 59.6
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 5.0e-51 205.3 210 51.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 7.2e-50 201.4 230 47.8
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.0e-48 196.1 231 53.2
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 5.7e-47 191.8 170 59.4
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.8e-46 189.5 225 47.1
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 6.3e-46 188.3 279 43.4
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.1e-45 187.6 171 52.6
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.1e-45 187.6 222 46.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.4e-45 187.2 229 46.3
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 7.0e-45 184.9 132 65.2
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.2e-44 184.1 231 51.5
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.2e-44 184.1 165 61.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 1.6e-44 183.7 188 52.7
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.7e-44 183.0 155 56.8
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.5e-44 182.2 224 46.0
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 3.3e-42 176.0 123 66.7
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 8.9e-40 167.9 216 47.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.5e-39 167.2 147 57.8
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.6e-39 166.4 106 67.0
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 3.4e-39 166.0 193 45.1
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.9e-37 160.2 232 44.4
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.9e-37 160.2 232 44.4
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 5.4e-37 158.7 229 45.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 8.0e-33 144.8 84 83.3
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.2e-29 132.9 88 70.5
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 4.3e-26 122.5 118 60.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.4e-21 106.7 86 65.1
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.1e-16 91.3 56 76.8
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 6.8e-16 88.6 52 76.9
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 9.9e-07 58.2 136 34.6


User provided reference genes

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