Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 1.2e-158 563.1 297 100.0
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 8.3e-131 470.7 296 82.1
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 5.6e-127 458.0 295 81.0
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.1e-126 456.1 296 80.1
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 4.7e-126 454.9 344 71.8
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-125 453.4 296 81.1
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.4e-125 453.4 296 81.1
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.4e-125 453.4 344 71.8
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 5.2e-125 451.4 296 81.1
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 2.6e-124 449.1 297 80.1
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.4e-124 448.4 292 82.2
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.4e-124 448.4 292 82.2
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 7.5e-124 447.6 297 79.8
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 9.8e-124 447.2 295 81.4
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 9.8e-124 447.2 297 79.8
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 3.7e-123 445.3 299 80.3
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 8.3e-123 444.1 296 78.0
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 1.1e-122 443.7 293 81.9
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 1.4e-122 443.4 296 79.1
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 3.5e-121 438.7 292 80.1
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 4.6e-121 438.3 292 80.1
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.0e-120 437.2 294 78.2
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 1.3e-120 436.8 296 78.7
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.7e-120 436.4 292 80.1
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 1.7e-120 436.4 294 76.2
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 1.7e-120 436.4 292 80.5
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 3.9e-120 435.3 294 76.2
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 8.6e-120 434.1 297 78.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 3.3e-119 432.2 294 77.9
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.3e-119 432.2 294 78.2
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 3.3e-119 432.2 293 78.5
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.2e-118 430.3 297 78.8
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.8e-118 429.1 295 75.9
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.8e-118 429.1 295 75.9
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 3.6e-118 428.7 294 77.2
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 4.7e-118 428.3 296 78.7
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 4.7e-118 428.3 297 76.8
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 6.2e-118 427.9 295 75.3
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 8.1e-118 427.6 295 76.6
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 8.1e-118 427.6 293 77.5
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.1e-117 427.2 292 76.4
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.4e-117 426.8 292 76.4
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.8e-117 426.4 295 76.9
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 3.1e-117 425.6 288 78.1
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 4.0e-117 425.2 295 78.0
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 6.8e-117 424.5 287 79.4
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 8.9e-117 424.1 297 74.7
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.2e-116 423.7 296 76.7
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 2.0e-116 422.9 294 74.5
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.6e-116 422.5 292 76.7
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 7.5e-116 421.0 294 76.2
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.3e-115 420.2 296 77.0
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 1.3e-115 420.2 292 78.1
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 4.9e-115 418.3 289 78.2
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 8.3e-115 417.5 296 75.3
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 2.4e-114 416.0 289 77.9
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 2.4e-114 416.0 283 78.1
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 3.2e-114 415.6 297 75.4
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 4.1e-114 415.2 292 76.0
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 9.2e-114 414.1 290 76.2
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 9.2e-114 414.1 295 76.6
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 2.7e-113 412.5 287 77.4
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 6.0e-113 411.4 294 76.2
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 7.8e-113 411.0 296 74.0
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 1.0e-112 410.6 287 75.3
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 3.0e-112 409.1 354 66.7
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 3.0e-112 409.1 305 72.8
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 3.0e-112 409.1 286 75.9
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 3.0e-112 409.1 288 77.8
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 3.9e-112 408.7 290 74.8
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 3.9e-112 408.7 294 74.5
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 3.3e-111 405.6 294 73.1
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 3.3e-111 405.6 296 75.0
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 5.6e-111 404.8 297 73.7
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 4.7e-110 401.7 310 70.3
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.1e-109 400.6 288 76.7
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 2.4e-109 399.4 296 76.7
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 2.4e-109 399.4 296 73.3
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.1e-109 399.1 275 77.5
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 3.1e-109 399.1 275 77.5
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 3.1e-109 399.1 296 73.0
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 5.2e-109 398.3 274 74.5
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 6.8e-109 397.9 295 72.5
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 2.0e-108 396.4 292 74.3
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.6e-108 396.0 291 74.9
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 2.6e-108 396.0 286 74.1
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 2.6e-108 396.0 297 72.4
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 5.8e-108 394.8 326 69.3
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 5.8e-108 394.8 238 84.9
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 7.6e-108 394.4 295 72.5
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 9.9e-108 394.0 289 75.1
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 1.3e-107 393.7 297 72.1
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 2.2e-107 392.9 303 74.3
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 4.9e-107 391.7 296 72.3
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 1.1e-106 390.6 295 70.2
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 5.4e-106 388.3 298 70.1
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 5.4e-106 388.3 298 70.1
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 5.4e-106 388.3 321 69.8
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 7.1e-106 387.9 294 71.1
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 9.2e-106 387.5 292 72.3
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 9.2e-106 387.5 292 72.3
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.1e-105 386.3 294 72.8
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 2.1e-105 386.3 293 71.3
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 2.1e-105 386.3 298 69.5
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 7.8e-105 384.4 292 71.6
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.3e-104 383.6 293 71.0
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.7e-104 383.3 294 70.1
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 3.9e-104 382.1 293 70.6
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 6.6e-104 381.3 297 70.4
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.5e-103 380.2 294 71.8
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 2.8e-102 375.9 294 70.1
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 2.4e-101 372.9 291 70.4
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 5.8e-100 368.2 296 67.9
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 7.6e-100 367.9 271 74.9
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.3e-99 367.1 297 67.0
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.7e-99 366.7 301 67.4
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.2e-99 366.3 294 68.0
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 2.1e-97 359.8 353 60.6
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.3e-96 357.1 328 63.4
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 8.7e-96 354.4 231 79.7
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.5e-95 353.6 289 67.1
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 5.6e-95 351.7 289 66.4
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 4.0e-93 345.5 229 77.3
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 4.0e-93 345.5 266 69.2
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 9.0e-93 344.4 294 63.9
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 9.0e-93 344.4 295 67.5
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 4.6e-89 332.0 223 76.7
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 1.0e-88 330.9 200 85.5
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 5.1e-88 328.6 230 73.9
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.8e-86 322.8 229 73.4
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 1.5e-84 317.0 229 75.1
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 3.5e-81 305.8 230 67.8
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.1e-80 302.0 225 69.3
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.1e-79 300.8 218 72.9
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.2e-76 290.8 267 60.3
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.2e-76 290.8 201 72.6
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 1.0e-75 287.7 184 79.9
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 8.4e-75 284.6 296 57.8
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.4e-74 283.9 265 61.9
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 1.9e-74 283.5 198 73.7
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 2.7e-73 279.6 186 79.0
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.0e-72 277.7 266 61.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.6e-57 227.3 232 52.6
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 8.2e-54 214.9 181 64.6
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 2.4e-53 213.4 226 50.9
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 2.6e-52 209.9 235 49.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 3.8e-51 206.1 150 72.0
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 5.2e-40 169.1 215 44.7
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 9.7e-39 164.9 162 57.4
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 7.2e-26 122.1 286 38.1
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 1.3e-22 111.3 69 84.1
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 2.7e-20 103.6 59 88.1
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 7.8e-20 102.1 63 84.1
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 6.8e-16 89.0 118 48.3
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.4e-13 81.3 127 40.2
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 2.1e-09 67.4 56 66.1
Glyma.15G250600 Glycine max HOM05D004655 ORTHO05D215793 6.4e-06 55.8 32 78.1
Oeu037167.1 Olea europaea HOM05D004655 ORTHO05D005567 8.3e-06 55.5 28 85.7


User provided reference genes

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