Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G151750 Manihot esculenta HOM05D004263 ORTHO05D004931 1.2e-94 349.7 171 100.0
TWI75G0058 Tripterygium wilfordii HOM05D004263 ORTHO05D004931 8.7e-16 87.8 160 38.1
Manes.12G082900 Manihot esculenta HOM05D004263 ORTHO05D004931 1.1e-15 87.4 160 38.1
Lj1C736G5 Lonicera japonica HOM05D004263 ORTHO05D004931 4.3e-15 85.5 142 39.4
CiPaw.03G169700 Carya illinoinensis HOM05D004263 ORTHO05D004931 5.7e-15 85.1 160 37.5
Ciclev10014147m.g Citrus clementina HOM05D004263 ORTHO05D004931 9.6e-15 84.3 160 36.2
Potri.013G147600 Populus trichocarpa HOM05D004263 ORTHO05D004931 9.6e-15 84.3 160 36.9
Sabra13G0119200 Salix brachista HOM05D004263 ORTHO05D004931 9.6e-15 84.3 160 36.9
Gohir.A01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 1.3e-14 84.0 160 36.2
Gohir.D01G015400 Gossypium hirsutum HOM05D004263 ORTHO05D004931 1.3e-14 84.0 160 36.2
Gorai.002G017100 Gossypium raimondii HOM05D004263 ORTHO05D004931 1.3e-14 84.0 160 36.2
Atru.chr6.3077 Acer truncatum HOM05D004263 ORTHO05D004931 1.6e-14 83.6 160 36.2
Duzib248G0991 Durio zibethinus HOM05D004263 ORTHO05D004931 1.6e-14 83.6 160 36.9
CSS0039065 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 2.1e-14 83.2 173 34.1
CANSAT64G2398 Cannabis sativa HOM05D004263 ORTHO05D004931 2.1e-14 83.2 160 36.2
Prupe.3G231000 Prunus persica HOM05D004263 ORTHO05D004931 2.1e-14 83.2 160 36.2
Cfa014543 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.8e-14 82.8 160 36.2
Haze_03591 Corylus avellana HOM05D004263 ORTHO05D004931 2.8e-14 82.8 160 36.2
Haze_13086 Corylus avellana HOM05D004263 ORTHO05D004931 2.8e-14 82.8 160 36.2
RcHm_v2.0_Chr2g0161771 Rosa chinensis HOM05D004263 ORTHO05D004931 3.7e-14 82.4 160 36.9
MELO3C018764.2 Cucumis melo HOM05D004263 ORTHO05D004931 4.8e-14 82.0 160 35.0
CsaV3_7G004120 Cucumis sativus L. HOM05D004263 ORTHO05D004931 4.8e-14 82.0 160 35.0
Sed0028127 Sechium edule HOM05D004263 ORTHO05D004931 4.8e-14 82.0 160 35.0
Actinidia30490 Actinidia chinensis HOM05D004263 ORTHO05D004931 6.2e-14 81.6 160 35.6
Cpa.g.sc34.88 Carica papaya HOM05D004263 ORTHO05D004931 6.2e-14 81.6 160 36.2
CSS0005038 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 8.2e-14 81.3 160 35.6
FvH4_6g44560 Fragaria vesca HOM05D004263 ORTHO05D004931 1.1e-13 80.9 160 36.2
FAN02G3638 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.1e-13 80.9 160 36.2
FAN09G1275 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.1e-13 80.9 160 36.2
FAN14G1228 Fragaria x ananassa HOM05D004263 ORTHO05D004931 1.1e-13 80.9 160 36.2
TAR627G0082 Trochodendron aralioides HOM05D004263 ORTHO05D004931 1.1e-13 80.9 180 33.9
Eucgr.K00914 Eucalyptus grandis HOM05D004263 ORTHO05D004931 1.4e-13 80.5 160 35.6
QL08p037295 Quercus lobata HOM05D004263 ORTHO05D004931 1.4e-13 80.5 160 35.6
MSTRG.11470 Avicennia marina HOM05D004263 ORTHO05D004931 1.8e-13 80.1 160 34.4
CSS0002238 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.8e-13 80.1 160 35.0
CSS0035062 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 1.8e-13 80.1 160 35.0
Hma1.2p1_0565F.1_g179560 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.8e-13 80.1 160 35.6
Hma1.2p1_0565F.1_g179570 Hydrangea macrophylla HOM05D004263 ORTHO05D004931 1.8e-13 80.1 160 35.6
COL.COLO4_13682 Corchorus olitorius HOM05D004263 ORTHO05D004931 2.4e-13 79.7 160 35.6
PGR142G2990 Punica granatum HOM05D004263 ORTHO05D004931 4.1e-13 79.0 161 35.4
arahy.Tifrunner.gnm1.ann1.0PC56D Arachis hypogaea HOM05D004263 ORTHO05D004931 5.3e-13 78.6 160 35.0
arahy.Tifrunner.gnm1.ann1.RA2UAB Arachis hypogaea HOM05D004263 ORTHO05D004931 5.3e-13 78.6 160 35.0
CSS0035503 Camellia sinensis var. sinensis HOM05D004263 ORTHO05D004931 5.3e-13 78.6 160 34.4
GSVIVG01030005001 Vitis vinifera HOM05D004263 ORTHO05D004931 5.3e-13 78.6 160 35.6
Lalb_Chr22g0356351 Lupinus albus HOM05D004263 ORTHO05D004931 6.9e-13 78.2 160 34.4
PSO801G0468 Papaver somniferum HOM05D004263 ORTHO05D004931 6.9e-13 78.2 180 33.9
Rhsim04G0063000 Rhododendron simsii HOM05D004263 ORTHO05D004931 6.9e-13 78.2 160 35.0
Psat2g144400 Pisum sativum HOM05D004263 ORTHO05D004931 9.0e-13 77.8 180 33.3
Solyc06g005080.4 Solanum lycopersicum HOM05D004263 ORTHO05D004931 9.0e-13 77.8 160 33.8
Thecc.02G171500 Theobroma cacao HOM05D004263 ORTHO05D004931 9.0e-13 77.8 160 35.6
AUR62034472 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.2e-12 77.4 140 36.4
AUR62041769 Chenopodium quinoa HOM05D004263 ORTHO05D004931 1.2e-12 77.4 140 36.4
PSO339G5244 Papaver somniferum HOM05D004263 ORTHO05D004931 1.2e-12 77.4 180 33.3
Phvul.005G107700 Phaseolus vulgaris HOM05D004263 ORTHO05D004931 1.5e-12 77.0 160 34.4
Medtr8g063380 Medicago truncatula HOM05D004263 ORTHO05D004931 2.0e-12 76.6 180 32.8
Cfa010655 Carpinus fangiana HOM05D004263 ORTHO05D004931 2.6e-12 76.3 160 35.0
Medtr5g026090 Medicago truncatula HOM05D004263 ORTHO05D004931 2.6e-12 76.3 177 32.8
Nitab4.5_0001514g0010 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.6e-12 76.3 155 33.5
Aqoxy1G01192 Aquilegia oxysepala HOM05D004263 ORTHO05D004931 3.4e-12 75.9 160 34.4
Glyma.12G201100 Glycine max HOM05D004263 ORTHO05D004931 3.4e-12 75.9 160 33.8
Glyma.13G301100 Glycine max HOM05D004263 ORTHO05D004931 3.4e-12 75.9 160 33.8
Sc08g0004410 Simmondsia chinensis HOM05D004263 ORTHO05D004931 3.4e-12 75.9 160 33.1
Sopen06g001070 Solanum pennellii HOM05D004263 ORTHO05D004931 3.4e-12 75.9 160 33.1
SGA_v2.0_scaffold90G27889 Striga asiatica HOM05D004263 ORTHO05D004931 3.4e-12 75.9 160 32.5
CDE05G0585 Ceratophyllum demersum HOM05D004263 ORTHO05D004931 4.5e-12 75.5 163 32.5
Lj3g0003932 Lotus japonicus HOM05D004263 ORTHO05D004931 4.5e-12 75.5 160 34.4
THA.LOC104809434 Tarenaya hassleriana HOM05D004263 ORTHO05D004931 4.5e-12 75.5 160 33.1
Ca_01536_v3 Cicer arietinum L. HOM05D004263 ORTHO05D004931 5.8e-12 75.1 180 32.2
MBI02_g13236_MAGBIO Magnolia biondii HOM05D004263 ORTHO05D004931 5.8e-12 75.1 180 31.7
Cc04_g12270 Coffea canephora HOM05D004263 ORTHO05D004931 7.6e-12 74.7 160 33.1
MD17G1084700 Malus domestica HOM05D004263 ORTHO05D004931 7.6e-12 74.7 158 33.5
TPR.G26159 Trifolium pratense HOM05D004263 ORTHO05D004931 1.3e-11 73.9 180 32.8
vmacro09293 Vaccinium macrocarpon HOM05D004263 ORTHO05D004931 1.3e-11 73.9 44 81.8
CAN.G2148.2 Capsicum annuum HOM05D004263 ORTHO05D004931 1.7e-11 73.6 158 33.5
MD14G1065300 Malus domestica HOM05D004263 ORTHO05D004931 1.7e-11 73.6 161 32.9
Nn2g15850 Nelumbo nucifera HOM05D004263 ORTHO05D004931 2.2e-11 73.2 180 32.2
Peaxi162Scf00255g01022 Petunia axillaris HOM05D004263 ORTHO05D004931 2.2e-11 73.2 160 32.5
SHI10474 Sapria himalayana HOM05D004263 ORTHO05D004931 2.2e-11 73.2 160 32.5
Actinidia39296 Actinidia chinensis HOM05D004263 ORTHO05D004931 2.9e-11 72.8 44 79.5
Dinv23715 Davidia involucrata HOM05D004263 ORTHO05D004931 2.9e-11 72.8 44 81.8
ECA246G4434 Erigeron canadensis HOM05D004263 ORTHO05D004931 2.9e-11 72.8 160 33.1
Lj8C117G6 Lonicera japonica HOM05D004263 ORTHO05D004931 2.9e-11 72.8 180 31.7
Oeu001693.1 Olea europaea HOM05D004263 ORTHO05D004931 6.5e-11 71.6 160 31.9
Aa31LG1G2150 Aethionema arabicum HOM05D004263 ORTHO05D004931 8.4e-11 71.2 160 31.9
DCAR_009724 Daucus carota HOM05D004263 ORTHO05D004931 8.4e-11 71.2 160 31.9
Migut.O00120 Erythranthe guttata HOM05D004263 ORTHO05D004931 1.1e-10 70.9 160 30.6
VMungo1080G0385 Vigna mungo HOM05D004263 ORTHO05D004931 1.4e-10 70.5 44 77.3
QL08p037237 Quercus lobata HOM05D004263 ORTHO05D004931 1.9e-10 70.1 44 77.3
Ah.11g047230 Amaranthus hybridus HOM05D004263 ORTHO05D004931 2.5e-10 69.7 159 31.4
CARHR012770 Cardamine hirsuta HOM05D004263 ORTHO05D004931 2.5e-10 69.7 44 77.3
ClCG02G001300 Citrullus lanatus HOM05D004263 ORTHO05D004931 2.5e-10 69.7 141 36.9
Lsat_1_v5_gn_3_39980 Lactuca sativa HOM05D004263 ORTHO05D004931 2.5e-10 69.7 160 31.9
ATR0737G173 Amborella trichopoda HOM05D004263 ORTHO05D004931 3.2e-10 69.3 160 30.6
A06p09160 Brassica napus HOM05D004263 ORTHO05D004931 3.2e-10 69.3 44 75.0
BolC5t29815H Brassica oleracea HOM05D004263 ORTHO05D004931 7.1e-10 68.2 44 75.0
BraA06t24102Z Brassica rapa HOM05D004263 ORTHO05D004931 7.1e-10 68.2 44 75.0
Thhalv10006686m.g Eutrema salsugineum HOM05D004263 ORTHO05D004931 7.1e-10 68.2 44 75.0
Sp1g11070 Schrenkiella parvula HOM05D004263 ORTHO05D004931 7.1e-10 68.2 44 75.0
BcaB03g13185 Brassica carinata HOM05D004263 ORTHO05D004931 9.3e-10 67.8 44 75.0
C08p15450 Brassica napus HOM05D004263 ORTHO05D004931 9.3e-10 67.8 44 75.0
BolC8t49173H Brassica oleracea HOM05D004263 ORTHO05D004931 9.3e-10 67.8 44 75.0
AL1G23830 Arabidopsis lyrata HOM05D004263 ORTHO05D004931 1.2e-09 67.4 44 75.0
AT1G12470 Arabidopsis thaliana HOM05D004263 ORTHO05D004931 1.2e-09 67.4 44 75.0
SalBow7G3995 Salvia bowleyana HOM05D004263 ORTHO05D004931 1.2e-09 67.4 160 28.8
Nitab4.5_0000025g0490 Nicotiana tabacum HOM05D004263 ORTHO05D004931 2.1e-09 66.6 44 70.5
Atru.chr5.268 Acer truncatum HOM05D004263 ORTHO05D004931 2.7e-09 66.2 79 48.1
EL10As1g23122 Beta vulgaris HOM05D004263 ORTHO05D004931 2.7e-09 66.2 44 72.7
BcaC05g25186 Brassica carinata HOM05D004263 ORTHO05D004931 2.7e-09 66.2 44 72.7
C05p10740 Brassica napus HOM05D004263 ORTHO05D004931 2.7e-09 66.2 44 72.7
A08p32810 Brassica napus HOM05D004263 ORTHO05D004931 3.5e-09 65.9 44 72.7
BraA08t35204Z Brassica rapa HOM05D004263 ORTHO05D004931 3.5e-09 65.9 44 72.7
HanXRQChr07g0200651 Helianthus annuus HOM05D004263 ORTHO05D004931 4.6e-09 65.5 160 31.2
Dinv23716 Davidia involucrata HOM05D004263 ORTHO05D004931 1.3e-08 63.9 82 48.8
Carub.0001s1218 Capsella rubella HOM05D004263 ORTHO05D004931 3.0e-08 62.8 44 68.2
unitig_0.g1433 Utricularia gibba HOM05D004263 ORTHO05D004931 3.9e-08 62.4 160 29.4
HPP92_004167 Vanilla planifolia HOM05D004263 ORTHO05D004931 1.9e-07 60.1 160 27.5
Oeu001695.1 Olea europaea HOM05D004263 ORTHO05D004931 4.3e-07 58.9 125 32.0
Os08g0178100 Oryza sativa ssp. japonica HOM05D004263 ORTHO05D004931 4.3e-07 58.9 180 28.3
Nitab4.5_0001514g0020 Nicotiana tabacum HOM05D004263 ORTHO05D004931 7.4e-07 58.2 81 44.4


User provided reference genes

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