Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 6.0e-38 160.2 74 100.0
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 1.3e-19 99.4 48 93.8
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.3e-19 99.4 49 89.8
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.6e-19 99.0 48 93.8
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 1.6e-19 99.0 48 93.8
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 2.1e-19 98.6 48 93.8
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 2.1e-19 98.6 48 93.8
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 3.6e-19 97.8 48 91.7
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 4.8e-19 97.4 48 91.7
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 4.8e-19 97.4 48 89.6
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 6.2e-19 97.1 48 89.6
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 8.1e-19 96.7 48 87.5
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 8.1e-19 96.7 48 87.5
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 8.1e-19 96.7 48 91.7
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 8.1e-19 96.7 48 91.7
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 8.1e-19 96.7 48 93.8
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 1.1e-18 96.3 48 89.6
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 1.1e-18 96.3 48 87.5
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.1e-18 96.3 49 85.7
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 1.4e-18 95.9 48 89.6
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 1.4e-18 95.9 48 89.6
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 1.4e-18 95.9 49 85.7
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 1.4e-18 95.9 49 87.8
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 1.8e-18 95.5 49 85.7
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 1.8e-18 95.5 48 91.7
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 1.8e-18 95.5 48 89.6
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 2.4e-18 95.1 48 89.6
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 2.4e-18 95.1 48 89.6
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 3.1e-18 94.7 48 89.6
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 3.1e-18 94.7 48 87.5
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 4.0e-18 94.4 49 83.7
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 4.0e-18 94.4 49 83.7
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 4.0e-18 94.4 49 83.7
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 4.0e-18 94.4 48 89.6
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 5.3e-18 94.0 48 87.5
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 5.3e-18 94.0 48 89.6
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 87.5
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 87.5
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 87.5
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 87.5
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 87.5
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 87.5
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 89.6
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 83.3
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 87.5
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 6.9e-18 93.6 48 87.5
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 6.9e-18 93.6 49 83.7
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 9.0e-18 93.2 48 87.5
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 9.0e-18 93.2 48 85.4
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 1.2e-17 92.8 48 85.4
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.5e-17 92.4 49 83.7
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 1.5e-17 92.4 48 85.4
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 1.5e-17 92.4 48 85.4
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 1.5e-17 92.4 48 85.4
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.5e-17 92.4 48 85.4
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 2.0e-17 92.0 48 85.4
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 2.0e-17 92.0 48 83.3
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.6e-17 91.7 48 85.4
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 2.6e-17 91.7 48 87.5
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 2.6e-17 91.7 48 87.5
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 2.6e-17 91.7 48 87.5
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 2.6e-17 91.7 48 83.3
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 3.4e-17 91.3 48 83.3
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 3.4e-17 91.3 48 83.3
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 3.4e-17 91.3 48 83.3
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 3.4e-17 91.3 48 81.2
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 4.5e-17 90.9 48 87.5
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 4.5e-17 90.9 48 83.3
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 4.5e-17 90.9 48 83.3
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 4.5e-17 90.9 48 85.4
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 4.5e-17 90.9 48 83.3
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 5.8e-17 90.5 48 83.3
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 5.8e-17 90.5 48 81.2
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 5.8e-17 90.5 48 83.3
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 5.8e-17 90.5 48 83.3
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 7.6e-17 90.1 49 81.6
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 9.9e-17 89.7 48 81.2
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 9.9e-17 89.7 48 83.3
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 9.9e-17 89.7 49 79.6
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 9.9e-17 89.7 48 85.4
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 9.9e-17 89.7 48 85.4
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 9.9e-17 89.7 48 81.2
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 9.9e-17 89.7 48 85.4
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 1.3e-16 89.4 48 83.3
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 1.3e-16 89.4 48 81.2
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 1.3e-16 89.4 48 81.2
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 1.3e-16 89.4 48 85.4
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 1.7e-16 89.0 49 77.6
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 1.7e-16 89.0 49 77.6
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 1.7e-16 89.0 48 85.4
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 1.7e-16 89.0 49 83.7
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 1.7e-16 89.0 48 79.2
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 1.7e-16 89.0 43 93.0
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 2.2e-16 88.6 49 81.6
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 2.2e-16 88.6 48 81.2
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 2.2e-16 88.6 48 83.3
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 2.2e-16 88.6 48 83.3
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 2.9e-16 88.2 49 75.5
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 2.9e-16 88.2 49 75.5
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 2.9e-16 88.2 49 75.5
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 2.9e-16 88.2 48 83.3
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 2.9e-16 88.2 48 85.4
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 3.8e-16 87.8 48 83.3
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 3.8e-16 87.8 48 83.3
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 3.8e-16 87.8 48 81.2
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 4.9e-16 87.4 49 77.6
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.9e-16 87.4 48 83.3
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.9e-16 87.4 48 83.3
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 4.9e-16 87.4 48 83.3
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 4.9e-16 87.4 48 83.3
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 4.9e-16 87.4 48 81.2
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 6.4e-16 87.0 48 79.2
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 6.4e-16 87.0 49 79.6
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 8.4e-16 86.7 48 85.4
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 1.1e-15 86.3 48 81.2
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 1.4e-15 85.9 48 81.2
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 1.4e-15 85.9 48 81.2
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 1.4e-15 85.9 48 77.1
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.4e-15 85.9 48 79.2
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 1.9e-15 85.5 49 79.6
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 1.9e-15 85.5 48 79.2
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 2.4e-15 85.1 49 75.5
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 2.4e-15 85.1 48 81.2
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 3.2e-15 84.7 48 77.1
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 3.2e-15 84.7 48 79.2
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 4.2e-15 84.3 48 75.0
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 4.2e-15 84.3 48 75.0
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 7.1e-15 83.6 48 75.0
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 7.1e-15 83.6 41 92.7
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 9.3e-15 83.2 48 79.2
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 1.2e-14 82.8 48 79.2
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 1.2e-14 82.8 48 79.2
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 1.2e-14 82.8 48 79.2
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 1.2e-14 82.8 48 75.0
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 1.2e-14 82.8 48 75.0
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 1.6e-14 82.4 48 72.9
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 2.1e-14 82.0 48 79.2
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 2.1e-14 82.0 48 75.0
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 2.7e-14 81.6 48 77.1
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 2.7e-14 81.6 48 77.1
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 2.7e-14 81.6 48 77.1
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 2.7e-14 81.6 48 77.1
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 2.7e-14 81.6 48 77.1
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 2.7e-14 81.6 48 77.1
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 2.7e-14 81.6 48 72.9
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 3.5e-14 81.3 48 75.0
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 3.5e-14 81.3 48 77.1
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 3.5e-14 81.3 48 77.1
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 3.5e-14 81.3 48 75.0
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 6.0e-14 80.5 48 70.8
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 7.9e-14 80.1 48 66.7
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 1.0e-13 79.7 48 70.8
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 1.0e-13 79.7 48 72.9
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 1.3e-13 79.3 48 68.8
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 1.3e-13 79.3 48 75.0
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 1.8e-13 79.0 48 77.1
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 2.3e-13 78.6 48 70.8
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 3.0e-13 78.2 48 64.6
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 3.0e-13 78.2 48 75.0
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 3.9e-13 77.8 48 75.0
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 6.7e-13 77.0 43 83.7
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 1.1e-12 76.3 48 72.9
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 3.3e-12 74.7 48 72.9
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 3.3e-12 74.7 41 82.9
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 9.6e-12 73.2 50 68.0
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.3e-11 72.8 48 70.8
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.3e-11 72.8 48 70.8
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.3e-11 72.8 48 70.8
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 2.1e-11 72.0 44 77.3
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 3.7e-11 71.2 40 77.5
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 3.7e-11 71.2 51 60.8
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.8e-11 70.9 41 78.0
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 8.1e-11 70.1 48 66.7
A09p58700 Brassica napus HOM05D003865 ORTHO05D004466 9.0e-10 66.6 39 76.9
Mapoly0067s0090 Marchantia polymorpha HOM05D003865 ORTHO05D004466 5.5e-07 57.4 43 53.5


User provided reference genes

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