Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 6.5e-130 467.6 274 100.0
Manes.12G087900 Manihot esculenta HOM05D010652 ORTHO05D003109 3.7e-69 265.8 283 64.3
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 3.7e-32 142.9 286 49.3
Potri.005G086300 Populus trichocarpa HOM05D010652 ORTHO05D003109 1.8e-26 124.0 238 55.5
Potri.007G078350 Populus trichocarpa HOM05D010652 ORTHO05D003109 3.3e-25 119.8 200 54.5
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 8.2e-24 115.2 288 41.3
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 3.1e-23 113.2 314 42.4
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 2.2e-21 107.1 306 37.9
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 2.7e-19 100.1 293 39.9
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 4.6e-19 99.4 317 39.4
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 1.5e-17 94.4 316 38.0
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 8.2e-16 88.6 310 34.5
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 2.4e-15 87.0 340 35.6
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 4.5e-14 82.8 326 33.7
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 4.5e-14 82.8 299 36.5
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.9e-13 80.1 313 37.4
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.1e-12 78.2 326 31.6
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.1e-12 78.2 284 33.1
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.9e-12 77.4 340 33.5
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 2.5e-12 77.0 313 34.2
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 3.2e-12 76.6 293 34.5
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 3.2e-12 76.6 330 34.2
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 5.5e-12 75.9 295 33.6
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 7.2e-12 75.5 335 31.6
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.2e-11 74.7 304 34.2
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.6e-11 74.3 287 35.9
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.6e-11 74.3 337 29.4
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.1e-11 73.9 289 33.6
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 2.1e-11 73.9 289 33.6
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 2.1e-11 73.9 322 34.5
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 2.7e-11 73.6 255 34.1
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 2.7e-11 73.6 291 34.4
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.7e-11 73.6 343 34.4
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 3.6e-11 73.2 291 35.1
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 6.1e-11 72.4 305 33.8
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 6.1e-11 72.4 294 30.6
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.0e-10 71.6 253 33.6
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.4e-10 71.2 287 36.6
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.4e-10 71.2 287 36.6
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.4e-10 71.2 301 32.6
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.3e-10 70.5 316 33.5
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 3.0e-10 70.1 293 33.8
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 3.9e-10 69.7 297 33.7
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 5.1e-10 69.3 309 33.3
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 5.1e-10 69.3 264 39.0
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 5.1e-10 69.3 342 29.8
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 5.1e-10 69.3 291 34.7
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 8.8e-10 68.6 309 33.7
Ca_01527_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 1.1e-09 68.2 292 33.2
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.1e-09 68.2 329 35.3
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.1e-09 68.2 329 35.3
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 1.1e-09 68.2 330 30.9
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.1e-09 68.2 286 35.0
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 2.0e-09 67.4 296 33.1
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 2.6e-09 67.0 271 38.0
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 2.6e-09 67.0 276 36.6
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.3e-09 66.6 265 33.6
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 4.4e-09 66.2 306 36.6
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 4.4e-09 66.2 276 35.1
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.4e-09 66.2 310 34.2
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 4.4e-09 66.2 339 32.7
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 5.7e-09 65.9 310 34.5
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 7.4e-09 65.5 337 35.3
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 9.7e-09 65.1 282 34.4
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.3e-08 64.7 299 33.8
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.2e-08 63.9 318 34.3
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 2.8e-08 63.5 311 34.4
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 3.7e-08 63.2 286 35.0
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 3.7e-08 63.2 330 31.5
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 4.8e-08 62.8 303 31.0
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 4.8e-08 62.8 268 32.8
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 4.8e-08 62.8 297 33.3
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 8.2e-08 62.0 296 34.1
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.4e-07 61.2 279 35.5
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 2.4e-07 60.5 331 32.9
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 2.4e-07 60.5 285 33.3
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 4.1e-07 59.7 281 32.7
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 6.9e-07 58.9 309 30.7
Prupe.3G233700 Prunus persica HOM05D010652 ORTHO05D003109 9.1e-07 58.5 367 31.6
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 9.1e-07 58.5 300 29.7
Thecc.02G174400 Theobroma cacao HOM05D053928 ORTHO05D003109 9.1e-07 58.5 250 38.0
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.2e-06 58.2 321 34.0
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 2.6e-06 57.0 305 31.8
COL.COLO4_13710 Corchorus olitorius HOM05D053928 ORTHO05D003109 3.4e-06 56.6 300 36.3
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 3.4e-06 56.6 311 29.6
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 4.5e-06 56.2 293 33.4
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 4.5e-06 56.2 310 31.0
Eucgr.K00944 Eucalyptus grandis HOM05D010652 ORTHO05D003109 5.9e-06 55.8 302 34.8
PGR142G1157 Punica granatum HOM05D010652 ORTHO05D003109 7.7e-06 55.5 292 30.8
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 7.7e-06 55.5 257 32.7
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 7.7e-06 55.5 293 30.7


User provided reference genes

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