Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 3.6e-152 541.6 280 100.0
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 5.8e-102 374.8 285 73.0
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 1.4e-100 370.2 282 73.4
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 5.5e-100 368.2 287 71.4
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.6e-99 366.7 266 73.3
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.1e-99 366.3 281 71.5
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 4.6e-99 365.2 266 73.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.8e-98 363.2 254 76.8
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.0e-98 362.5 266 72.9
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 5.1e-98 361.7 257 75.1
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 8.7e-98 360.9 281 70.1
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 8.7e-98 360.9 281 70.1
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 2.5e-97 359.4 285 70.5
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 9.7e-97 357.5 254 74.8
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 9.7e-97 357.5 272 72.8
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.3e-96 357.1 222 82.9
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 1.3e-96 357.1 277 70.0
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.8e-96 355.9 284 71.1
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 6.9e-95 351.3 286 69.2
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 9.0e-95 350.9 245 72.2
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.5e-94 350.1 283 68.9
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.9e-93 345.9 284 67.6
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 8.5e-93 344.4 279 69.2
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 1.9e-92 343.2 290 66.9
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 4.2e-92 342.0 248 74.2
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 5.5e-92 341.7 249 72.3
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 5.5e-92 341.7 279 67.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 7.2e-92 341.3 258 71.3
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 9.4e-92 340.9 249 72.3
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.2e-91 340.5 266 71.1
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 7.9e-91 337.8 238 73.9
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.4e-90 337.0 249 70.7
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 1.8e-90 336.7 229 75.5
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.3e-90 336.3 276 65.9
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 3.9e-90 335.5 276 67.0
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 5.1e-90 335.1 281 66.2
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 5.1e-90 335.1 213 79.3
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 6.7e-90 334.7 202 81.2
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 8.8e-90 334.3 247 71.7
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.1e-89 334.0 276 66.7
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 2.0e-89 333.2 272 68.0
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 2.0e-89 333.2 242 71.5
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 4.3e-89 332.0 268 66.4
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 5.7e-89 331.6 268 68.7
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 7.4e-89 331.3 287 63.4
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 7.4e-89 331.3 277 66.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 9.7e-89 330.9 202 80.7
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.3e-88 330.5 264 67.4
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.2e-88 329.7 286 65.0
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 2.8e-88 329.3 202 83.2
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.7e-88 328.9 202 84.2
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 4.8e-88 328.6 264 67.8
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 6.3e-88 328.2 274 65.7
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 6.3e-88 328.2 280 63.9
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 6.3e-88 328.2 276 63.4
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 6.3e-88 328.2 252 71.8
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.1e-87 327.4 203 78.8
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 1.4e-87 327.0 265 64.9
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.4e-87 326.2 273 66.3
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 2.4e-87 326.2 272 66.2
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 3.1e-87 325.9 202 80.2
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 4.1e-87 325.5 203 78.3
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 4.1e-87 325.5 235 72.3
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.1e-87 325.5 277 63.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 4.1e-87 325.5 247 69.2
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 4.1e-87 325.5 270 64.8
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 9.1e-87 324.3 210 77.1
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 9.1e-87 324.3 287 64.1
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 9.1e-87 324.3 245 68.6
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.2e-86 323.9 235 71.9
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.2e-86 323.9 235 71.9
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.0e-86 323.2 218 74.8
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.6e-86 322.8 245 68.2
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 3.4e-86 322.4 238 71.4
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 3.4e-86 322.4 274 64.2
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 4.5e-86 322.0 218 74.3
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.9e-86 321.6 288 66.0
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 5.9e-86 321.6 201 79.6
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.7e-86 321.2 281 64.1
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 1.0e-85 320.9 280 61.8
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 1.7e-85 320.1 288 65.6
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 1.7e-85 320.1 281 62.3
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 1.7e-85 320.1 284 63.7
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 5.0e-85 318.5 258 66.7
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 5.0e-85 318.5 202 79.7
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 6.5e-85 318.2 271 62.0
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 1.9e-84 316.6 248 68.5
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-84 315.5 291 64.6
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 4.2e-84 315.5 277 65.7
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 7.2e-84 314.7 275 62.2
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.2e-83 313.9 240 69.6
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.6e-83 313.5 282 63.5
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.7e-83 312.8 273 65.2
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 3.6e-83 312.4 273 64.8
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 4.7e-83 312.0 203 77.8
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 7.9e-83 311.2 240 69.2
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 8.8e-82 307.8 234 69.2
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.5e-81 307.0 191 79.6
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 3.3e-81 305.8 200 76.0
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 5.7e-81 305.1 201 77.6
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 5.7e-81 305.1 270 62.6
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 1.7e-80 303.5 245 66.9
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 4.8e-80 302.0 243 69.5
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 6.3e-80 301.6 229 69.9
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 4.1e-79 298.9 266 62.4
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 1.2e-78 297.4 224 67.9
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.0e-77 294.3 226 68.6
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.7e-77 293.5 202 74.3
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 9.4e-76 287.7 186 79.0
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.6e-75 287.0 182 80.2
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 3.6e-75 285.8 206 69.4
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 6.1e-75 285.0 242 62.8
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.8e-74 283.5 196 70.9
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 8.8e-74 281.2 205 70.2
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 8.8e-74 281.2 215 63.7
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 5.7e-73 278.5 206 66.0
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.1e-71 274.2 177 76.8
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 4.1e-71 272.3 177 77.4
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 9.1e-71 271.2 198 67.2
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 9.1e-71 271.2 258 60.5
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.9e-69 266.2 266 57.1
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.5e-68 263.1 179 73.7
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 4.2e-68 262.3 184 73.9
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 4.5e-62 242.3 256 53.9
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 5.9e-62 241.9 173 72.8
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 7.7e-62 241.5 253 53.8
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 8.0e-59 231.5 165 70.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 8.0e-59 231.5 165 70.9
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 1.8e-58 230.3 256 51.6
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 2.6e-57 226.5 186 67.2
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 3.4e-57 226.1 275 51.6
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 5.7e-57 225.3 279 51.6
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 2.3e-53 213.4 190 61.6
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 2.6e-49 199.9 131 77.1
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 9.2e-47 191.4 111 82.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.3e-45 187.6 196 49.0
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 3.3e-44 183.0 235 44.7
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.0e-42 177.9 113 77.0
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 8.6e-37 158.3 94 80.9
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 9.5e-36 154.8 212 47.2
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 3.1e-34 149.8 222 42.8
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.2e-33 147.9 88 80.7
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.2e-25 121.3 187 40.6
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 6.4e-24 115.5 145 50.3
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 1.1e-23 114.8 156 41.7
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-22 111.3 70 77.1
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.6e-22 110.9 209 33.0
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 3.5e-22 109.8 203 34.5
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 6.0e-22 109.0 117 57.3
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 6.8e-18 95.5 199 32.7
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 2.6e-17 93.6 171 38.6
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 3.5e-14 83.2 66 63.6
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.1e-11 73.9 111 44.1
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 6.2e-11 72.4 65 58.5
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 6.9e-10 68.9 71 60.6
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 2.6e-09 67.0 38 81.6
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 1.1e-07 61.6 42 73.8


User provided reference genes

Program Settings