Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.1e-134 483.4 253 100.0
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.5e-53 212.2 252 50.4
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 4.5e-53 212.2 252 50.4
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 9.5e-51 204.5 255 48.6
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 1.2e-50 204.1 250 52.4
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 2.1e-50 203.4 253 49.0
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 4.9e-47 192.2 252 47.2
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 2.7e-45 186.4 260 50.0
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 1.0e-44 184.5 272 42.3
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.0e-44 182.2 259 45.2
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.3e-43 179.1 261 45.6
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 7.3e-43 178.3 255 47.1
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 1.2e-42 177.6 259 47.1
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 1.2e-42 177.6 266 47.0
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 2.8e-42 176.4 254 46.5
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 2.8e-42 176.4 244 48.4
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 6.1e-42 175.3 253 47.0
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 6.1e-42 175.3 249 45.8
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.4e-41 174.1 258 47.3
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 4.0e-41 172.6 182 53.3
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 6.8e-41 171.8 269 44.6
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.5e-40 170.6 255 43.5
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 2.6e-40 169.9 252 46.4
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 3.4e-40 169.5 283 42.0
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 7.5e-40 168.3 250 45.6
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 1.3e-39 167.5 251 46.6
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.9e-39 166.4 257 45.9
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 3.7e-39 166.0 268 44.8
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 3.7e-39 166.0 258 44.2
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 6.4e-39 165.2 255 44.7
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 8.3e-39 164.9 269 42.0
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.4e-38 163.3 250 49.2
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 4.1e-38 162.5 258 43.8
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 7.0e-38 161.8 272 40.8
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 7.0e-38 161.8 251 48.6
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 1.6e-37 160.6 246 45.5
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 4.6e-37 159.1 262 42.7
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 4.6e-37 159.1 251 48.6
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 7.8e-37 158.3 254 42.9
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 1.0e-36 157.9 249 43.0
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 3.0e-36 156.4 251 41.4
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 5.0e-36 155.6 246 43.1
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 8.6e-36 154.8 284 42.3
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 1.5e-35 154.1 269 42.0
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 3.3e-35 152.9 284 41.5
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 4.3e-35 152.5 208 45.2
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 7.3e-35 151.8 247 45.7
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 1.2e-34 151.0 255 43.5
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 2.1e-34 150.2 266 42.1
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 3.6e-34 149.4 261 42.5
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 8.0e-34 148.3 92 76.1
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 8.0e-34 148.3 279 40.1
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 1.1e-33 147.9 248 42.3
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.1e-33 147.9 264 41.7
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 1.1e-33 147.9 245 40.8
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.4e-33 147.5 252 42.5
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 2.3e-33 146.7 252 44.0
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 2.3e-33 146.7 254 41.3
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 2.3e-33 146.7 258 41.9
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 3.1e-33 146.4 166 50.0
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 6.8e-33 145.2 82 81.7
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 8.9e-33 144.8 246 44.3
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 8.9e-33 144.8 84 81.0
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.2e-32 144.4 251 41.4
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 1.2e-32 144.4 237 42.2
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 2.6e-32 143.3 261 39.5
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 3.4e-32 142.9 250 39.6
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 3.4e-32 142.9 275 39.6
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 3.4e-32 142.9 253 40.3
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 4.4e-32 142.5 251 41.8
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 5.8e-32 142.1 252 40.1
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 9.8e-32 141.4 254 39.4
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 1.3e-31 141.0 137 56.9
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.7e-31 140.6 250 40.0
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.7e-31 140.6 252 42.1
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 1.7e-31 140.6 251 38.2
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 2.2e-31 140.2 255 40.8
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 2.9e-31 139.8 250 40.4
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.7e-31 139.4 249 41.4
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.7e-31 139.4 252 42.5
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 3.7e-31 139.4 82 78.0
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 8.3e-31 138.3 248 39.1
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 8.3e-31 138.3 167 48.5
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.4e-30 137.5 160 50.6
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 2.4e-30 136.7 249 40.6
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 3.2e-30 136.3 251 41.0
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 3.2e-30 136.3 254 42.5
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 3.2e-30 136.3 251 39.8
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 3.2e-30 136.3 250 38.4
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 4.1e-30 136.0 247 38.5
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 4.1e-30 136.0 250 40.8
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 5.4e-30 135.6 252 40.1
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.0e-29 133.7 254 39.0
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.0e-29 133.7 254 39.0
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 2.7e-29 133.3 151 51.7
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.7e-29 133.3 251 39.4
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 3.5e-29 132.9 263 41.1
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 3.5e-29 132.9 277 40.4
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 4.6e-29 132.5 250 38.8
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 6.0e-29 132.1 165 46.1
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 6.0e-29 132.1 220 38.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 1.0e-28 131.3 171 46.8
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.3e-28 131.0 168 47.0
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.3e-28 131.0 77 79.2
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 3.0e-28 129.8 266 36.5
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 3.9e-28 129.4 266 39.8
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 3.3e-27 126.3 267 39.0
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 9.5e-27 124.8 165 45.5
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 2.1e-26 123.6 165 46.1
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 2.1e-26 123.6 165 46.1
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 3.6e-26 122.9 216 38.9
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 4.7e-26 122.5 208 39.9
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 6.2e-26 122.1 82 68.3
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 2.3e-25 120.2 252 40.1
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 6.8e-25 118.6 245 37.1
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 6.8e-25 118.6 245 37.1
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 8.9e-25 118.2 177 44.1
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 8.9e-25 118.2 145 48.3
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 1.2e-24 117.9 170 41.2
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 1.2e-24 117.9 170 41.2
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 2.6e-24 116.7 172 40.7
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 1.7e-23 114.0 89 62.9
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 2.9e-23 113.2 192 37.0
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 2.9e-23 113.2 91 64.8
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 8.3e-23 111.7 188 37.2
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.1e-22 111.3 139 50.4
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 1.4e-22 110.9 267 38.2
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 3.2e-22 109.8 114 49.1
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 1.2e-21 107.8 75 68.0
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 1.2e-21 107.8 252 36.1
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.6e-21 107.5 177 36.7
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.1e-21 107.1 178 43.3
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 6.6e-20 102.1 79 63.3
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 1.2e-18 97.8 315 30.5
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.6e-18 97.4 128 43.0
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 1.7e-15 87.4 100 46.0
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.2e-15 87.0 210 35.7
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.8e-15 86.3 180 33.9
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 5.4e-14 82.4 158 37.3
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 3.6e-10 69.7 245 29.0
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 1.1e-09 68.2 166 33.1
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 4.0e-09 66.2 170 33.5
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 4.4e-08 62.8 168 32.1


User provided reference genes

Program Settings