Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 1.8e-214 749.2 436 100.0
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 1.3e-92 344.4 439 58.3
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.2e-90 337.8 457 53.0
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.5e-88 330.9 441 54.6
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 4.7e-82 309.3 460 46.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 1.8e-81 307.4 455 47.0
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 6.8e-81 305.4 456 49.6
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 9.8e-80 301.6 462 49.4
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.1e-78 298.1 436 47.0
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 1.1e-78 298.1 444 46.2
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.8e-78 297.4 439 46.7
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 4.1e-78 296.2 455 45.7
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 7.0e-78 295.4 443 45.4
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 9.2e-78 295.0 447 45.9
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 1.2e-77 294.7 468 45.5
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.6e-77 294.3 456 44.5
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 2.0e-77 293.9 453 46.1
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 5.9e-77 292.4 457 46.0
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 2.9e-76 290.0 445 51.0
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 2.5e-75 287.0 445 52.6
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 4.3e-75 286.2 445 43.8
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 5.6e-75 285.8 441 44.4
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 2.1e-74 283.9 456 44.7
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 2.8e-74 283.5 446 43.9
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 4.7e-74 282.7 440 45.2
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 8.0e-74 282.0 459 52.1
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.0e-73 281.6 458 45.0
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 8.9e-73 278.5 442 43.9
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.2e-72 278.1 445 50.1
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 2.0e-72 277.3 441 44.0
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 4.4e-72 276.2 449 43.2
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 7.5e-72 275.4 348 56.9
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 1.4e-70 271.2 451 43.5
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.6e-69 267.7 456 41.9
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.0e-69 267.3 476 49.4
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 6.0e-69 265.8 445 42.7
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 7.8e-69 265.4 624 38.6
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.0e-68 265.0 224 65.6
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 1.3e-68 264.6 457 40.7
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.3e-68 264.6 460 41.7
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 1.7e-68 264.2 439 42.8
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 5.0e-68 262.7 447 43.0
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.1e-67 261.5 435 46.4
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 5.6e-67 259.2 451 41.9
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 1.1e-65 255.0 434 42.4
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.4e-65 254.6 448 45.1
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 1.4e-65 254.6 428 43.7
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 4.0e-65 253.1 448 41.7
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.5e-64 251.1 449 39.6
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 1.5e-64 251.1 448 40.4
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 7.5e-64 248.8 447 43.6
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 9.8e-64 248.4 443 42.0
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 3.7e-63 246.5 215 62.8
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 6.4e-63 245.7 457 41.6
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 6.4e-63 245.7 357 44.5
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.1e-62 245.0 385 44.2
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 2.4e-62 243.8 452 40.7
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 9.2e-62 241.9 446 41.0
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.2e-61 241.5 449 39.0
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.6e-61 241.1 238 58.0
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 3.5e-61 240.0 452 42.5
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 3.5e-61 240.0 212 61.8
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.0e-60 238.4 207 60.4
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.7e-60 237.7 196 63.3
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 2.3e-60 237.3 207 61.4
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 3.0e-60 236.9 434 50.0
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 1.1e-59 235.0 445 40.0
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.5e-59 234.6 437 38.7
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 5.6e-59 232.6 439 42.1
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 2.8e-58 230.3 203 60.1
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 1.8e-57 227.6 438 38.6
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 2.3e-57 227.3 523 41.3
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 5.2e-57 226.1 446 37.4
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 8.9e-57 225.3 220 57.3
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 1.5e-56 224.6 200 60.0
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 4.9e-55 219.5 434 38.5
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 6.4e-55 219.2 453 37.5
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.1e-54 218.4 606 38.0
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 3.2e-54 216.9 206 60.2
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 9.2e-54 215.3 233 51.9
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 6.0e-53 212.6 468 37.0
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.7e-52 211.1 437 37.8
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 3.0e-52 210.3 431 40.1
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 5.1e-52 209.5 166 63.3
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.1e-50 204.1 225 52.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.8e-50 203.8 439 37.8
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 4.7e-50 203.0 442 38.0
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.1e-49 201.8 200 58.5
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.0e-49 199.9 202 58.4
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 1.5e-48 198.0 453 34.4
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 2.4e-46 190.7 214 54.7
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 7.1e-46 189.1 170 59.4
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 7.8e-45 185.7 439 37.1
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 1.9e-43 181.0 330 43.0
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 5.6e-43 179.5 133 66.2
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.1e-41 175.3 439 35.3
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.1e-41 175.3 205 49.3
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.9e-39 167.2 207 49.8
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 4.9e-39 166.4 210 47.6
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 1.7e-36 157.9 439 36.9
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 6.6e-36 156.0 447 33.3
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 1.1e-35 155.2 368 35.6
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 7.3e-35 152.5 437 35.9
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 2.1e-34 151.0 232 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 4.8e-34 149.8 188 43.6
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 4.8e-34 149.8 437 35.2
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 8.1e-34 149.1 437 35.2
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 6.9e-33 146.0 208 48.1
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 5.8e-32 142.9 235 39.6
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.4e-30 138.3 372 36.0
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 2.3e-28 131.0 126 51.6
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.1e-27 128.6 375 39.2
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 3.7e-26 123.6 153 45.1
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 6.9e-25 119.4 368 40.2
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 6.9e-25 119.4 119 51.3
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.3e-23 115.2 210 42.9
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 6.5e-23 112.8 109 52.3
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 1.6e-21 108.2 436 31.0
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 2.3e-20 104.4 77 63.6
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 3.9e-20 103.6 89 57.3
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.5e-19 101.7 82 67.1
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 3.7e-18 97.1 68 64.7
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 6.3e-18 96.3 151 45.0
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 2.0e-16 91.3 163 38.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 5.9e-16 89.7 175 37.1
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.4e-14 85.1 179 36.9
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 9.3e-14 82.4 116 41.4
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 1.2e-13 82.0 106 42.5
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 6.7e-12 76.3 125 38.4
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 2.2e-10 71.2 43 72.1
BcaC07g36946 Brassica carinata HOM05D005116 ORTHO05D031782 2.8e-10 70.9 175 34.3
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 3.7e-10 70.5 91 53.8
BcaB06g29108 Brassica carinata HOM05D005116 ORTHO05D005937 3.7e-10 70.5 68 55.9
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 1.8e-09 68.2 57 61.4
BcaNung07287 Brassica carinata HOM05D005116 ORTHO05D005937 1.7e-07 61.6 61 54.1
BcaC03g18340 Brassica carinata HOM05D005116 ORTHO05D005937 3.8e-07 60.5 86 38.4
arahy.Tifrunner.gnm1.ann1.FT3874 Arachis hypogaea HOM05D000168 ORTHO05D000811 8.5e-07 59.3 52 55.8
C04p61610 Brassica napus HOM05D000171 ORTHO05D000101 1.9e-06 58.2 84 38.1
BolC2t12481H Brassica oleracea HOM05D005116 ORTHO05D005937 2.5e-06 57.8 84 36.9
BcaC01g05723 Brassica carinata HOM05D005116 ORTHO05D005937 4.2e-06 57.0 84 36.9
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 5.5e-06 56.6 43 62.8


User provided reference genes

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