Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G143800 Manihot esculenta HOM05D007676 ORTHO05D009456 1.7e-53 212.2 95 100.0
Manes.13G144000 Manihot esculenta HOM05D007676 ORTHO05D009456 1.6e-14 82.8 95 44.2
Thecc.02G183500 Theobroma cacao HOM05D007676 ORTHO05D009456 2.0e-14 82.4 93 40.9
TWI23G0504 Tripterygium wilfordii HOM05D007676 ORTHO05D009456 7.7e-14 80.5 88 47.7
Gohir.D01G017700 Gossypium hirsutum HOM05D007676 ORTHO05D009456 1.0e-13 80.1 90 41.1
Gohir.A01G019100 Gossypium hirsutum HOM05D007676 ORTHO05D009456 1.7e-13 79.3 89 41.6
Gorai.002G020000 Gossypium raimondii HOM05D007676 ORTHO05D009456 1.7e-13 79.3 89 41.6
CSS0044840 Camellia sinensis var. sinensis HOM05D007676 ORTHO05D009456 2.9e-13 78.6 91 41.8
Eucgr.A01837 Eucalyptus grandis HOM05D007676 ORTHO05D009456 8.6e-13 77.0 93 40.9
QL04p080567 Quercus lobata HOM05D007676 ORTHO05D009456 8.6e-13 77.0 94 41.5
FvH4_4g18390 Fragaria vesca HOM05D007676 ORTHO05D009456 5.5e-12 74.3 88 38.6
FAN07G1701 Fragaria x ananassa HOM05D007676 ORTHO05D009456 5.5e-12 74.3 88 38.6
FAN12G3844 Fragaria x ananassa HOM05D007676 ORTHO05D009456 5.5e-12 74.3 88 38.6
FAN12G3363 Fragaria x ananassa HOM05D007676 ORTHO05D009456 9.5e-12 73.6 88 38.6
RcHm_v2.0_Chr2g0127571 Rosa chinensis HOM05D007676 ORTHO05D009456 1.4e-10 69.7 95 37.9
Sabra07G0111500 Salix brachista HOM05D007676 ORTHO05D009456 3.4e-09 65.1 88 36.4
Rhsim06G0138800 Rhododendron simsii HOM05D000658 ORTHO05D000826 4.4e-09 64.7 74 41.9
arahy.Tifrunner.gnm1.ann1.SH5L4P Arachis hypogaea HOM05D029628 ORTHO05D009456 1.7e-08 62.8 88 35.2
Sp7g26360 Schrenkiella parvula HOM05D007676 ORTHO05D009456 2.2e-08 62.4 103 33.0
A03p58040 Brassica napus HOM05D000223 ORTHO05D000736 4.9e-08 61.2 99 33.3
BraA03t14868Z Brassica rapa HOM05D007676 ORTHO05D009456 4.9e-08 61.2 99 33.3
arahy.Tifrunner.gnm1.ann1.0QPA7A Arachis hypogaea HOM05D029628 ORTHO05D009456 1.1e-07 60.1 88 34.1
arahy.Tifrunner.gnm1.ann1.W0QD2B Arachis hypogaea HOM05D029628 ORTHO05D009456 1.1e-07 60.1 88 34.1
BcaB01g00503 Brassica carinata HOM05D000275 ORTHO05D000181 1.1e-07 60.1 79 34.2
A09p44710 Brassica napus HOM05D000275 ORTHO05D000181 1.1e-07 60.1 79 34.2
C08p26800 Brassica napus HOM05D000275 ORTHO05D000181 1.1e-07 60.1 79 34.2
BolC8t50294H Brassica oleracea HOM05D000275 ORTHO05D000181 1.1e-07 60.1 79 34.2
BraA09t39930Z Brassica rapa HOM05D000275 ORTHO05D000181 1.1e-07 60.1 79 34.2
Aqoxy4G02395 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 1.4e-07 59.7 88 31.8
Ca_07200_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 1.4e-07 59.7 89 33.7
Aqoxy4G02950 Aquilegia oxysepala HOM05D000275 ORTHO05D000181 2.4e-07 58.9 87 32.2
Carub.0007s1233 Capsella rubella HOM05D007676 ORTHO05D009456 2.4e-07 58.9 97 34.0
Aa31sc23G320 Aethionema arabicum HOM05D000275 ORTHO05D000181 3.1e-07 58.5 87 33.3
CARHR236150 Cardamine hirsuta HOM05D007676 ORTHO05D009456 4.1e-07 58.2 98 32.7
Thhalv10026526m.g Eutrema salsugineum HOM05D007676 ORTHO05D009456 4.1e-07 58.2 99 32.3
Medtr1g040335 Medicago truncatula HOM05D000275 ORTHO05D000181 4.1e-07 58.2 91 34.1
Ca_07194_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 5.4e-07 57.8 89 32.6
FvH4_6g26560 Fragaria vesca HOM05D007676 ORTHO05D009456 5.4e-07 57.8 89 33.7
Os12g0115500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 5.4e-07 57.8 87 32.2
VMungo1292G0001 Vigna mungo HOM05D000275 ORTHO05D000181 5.4e-07 57.8 91 33.0
AL7G24190 Arabidopsis lyrata HOM05D007676 ORTHO05D009456 7.0e-07 57.4 100 33.0
PGSC0003DMG400032819 Solanum tuberosum HOM05D007676 ORTHO05D009456 7.0e-07 57.4 90 33.3
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 9.2e-07 57.0 90 31.1
Actinidia02489 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.6e-06 56.2 94 31.9
Zm00001eb163880 Zea mays HOM05D000275 ORTHO05D000181 1.6e-06 56.2 91 31.9
AT4G28395 Arabidopsis thaliana HOM05D007676 ORTHO05D009456 2.0e-06 55.8 100 32.0
Sed0022427 Sechium edule HOM05D000275 ORTHO05D000181 2.7e-06 55.5 90 30.0
ECA248G3394 Erigeron canadensis HOM05D000275 ORTHO05D000181 4.5e-06 54.7 87 31.0
MBI02_g11175_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 4.5e-06 54.7 90 34.4
MBI02_g17304_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 4.5e-06 54.7 90 34.4
DCAR_005642 Daucus carota HOM05D000275 ORTHO05D010802 5.9e-06 54.3 90 32.2
DCAR_007816 Daucus carota HOM05D000275 ORTHO05D010802 5.9e-06 54.3 90 33.3
Peaxi162Scf00251g00108 Petunia axillaris HOM05D000275 ORTHO05D000181 5.9e-06 54.3 87 29.9


User provided reference genes

Program Settings