Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G130000 Manihot esculenta HOM05D006685 ORTHO05D008244 0.0e+00 1442.2 718 100.0
Potri.005G133500 Populus trichocarpa HOM05D006685 ORTHO05D008244 5.4e-200 701.8 686 58.6
Cfa004216 Carpinus fangiana HOM05D006685 ORTHO05D008244 4.9e-193 678.7 686 54.8
QL06p043714 Quercus lobata HOM05D006685 ORTHO05D008244 5.2e-187 658.7 699 51.5
Sabra05G0107200 Salix brachista HOM05D006685 ORTHO05D008244 3.7e-185 652.5 686 55.0
Atru.chr3.446 Acer truncatum HOM05D006685 ORTHO05D008244 3.1e-179 632.9 712 50.1
Dinv26751 Davidia involucrata HOM05D006685 ORTHO05D008244 1.9e-176 623.6 685 50.5
Thecc.01G048300 Theobroma cacao HOM05D006685 ORTHO05D008244 4.7e-172 609.0 683 48.5
RcHm_v2.0_Chr2g0103811 Rosa chinensis HOM05D006685 ORTHO05D008244 1.8e-171 607.1 689 50.4
TAR376G1120 Trochodendron aralioides HOM05D006685 ORTHO05D008244 6.8e-171 605.1 719 48.5
FAN28G0684 Fragaria x ananassa HOM05D006685 ORTHO05D008244 8.3e-169 598.2 685 49.2
FvH4_1g14850 Fragaria vesca HOM05D006685 ORTHO05D008244 7.1e-168 595.1 689 49.1
FAN28G1646 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.6e-167 592.4 685 48.9
Duzib187G0300 Durio zibethinus HOM05D006685 ORTHO05D008244 1.3e-166 590.9 680 49.0
FAN26G3106 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-162 577.8 719 46.7
CiPaw.02G011900 Carya illinoinensis HOM05D006685 ORTHO05D008244 1.5e-162 577.4 685 47.9
RcHm_v2.0_Chr1g0329901 Rosa chinensis HOM05D006685 ORTHO05D008244 2.2e-161 573.5 681 49.0
Hma1.2p1_0546F.1_g176210 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 2.4e-160 570.1 608 50.2
FAN23G0082 Fragaria x ananassa HOM05D006685 ORTHO05D008244 3.2e-160 569.7 685 47.4
MD15G1276100 Malus domestica HOM05D006685 ORTHO05D008244 5.4e-160 568.9 706 48.2
Gohir.A12G068800 Gossypium hirsutum HOM05D006685 ORTHO05D008244 8.9e-155 551.6 682 47.1
CSS0018173 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 1.1e-152 544.7 684 45.9
CANSAT01G2373 Cannabis sativa HOM05D006685 ORTHO05D008244 2.4e-152 543.5 690 46.1
Actinidia36520 Actinidia chinensis HOM05D006685 ORTHO05D008244 7.8e-151 538.5 691 46.5
Gorai.008G072600 Gossypium raimondii HOM05D006685 ORTHO05D008244 1.0e-150 538.1 682 46.2
Gohir.D12G090400 Gossypium hirsutum HOM05D006685 ORTHO05D008244 8.7e-150 535.0 682 45.9
VMungo0251G1647 Vigna mungo HOM05D006685 ORTHO05D008244 1.1e-149 534.6 689 44.4
Prupe.7G141900 Prunus persica HOM05D006685 ORTHO05D008244 1.3e-148 531.2 687 47.0
Lj7A20T60 Lonicera japonica HOM05D006685 ORTHO05D008244 4.0e-147 526.2 615 49.3
Phvul.003G248400 Phaseolus vulgaris HOM05D006685 ORTHO05D008244 2.0e-146 523.9 688 44.2
COL.COLO4_11329 Corchorus olitorius HOM05D006685 ORTHO05D008244 3.4e-146 523.1 683 43.9
Glyma.02G062800 Glycine max HOM05D006685 ORTHO05D008244 6.0e-143 512.3 687 43.5
Medtr8g079100 Medicago truncatula HOM05D006685 ORTHO05D008244 1.0e-142 511.5 688 42.9
Lalb_Chr16g0388451 Lupinus albus HOM05D006685 ORTHO05D008244 5.1e-142 509.2 687 42.9
TPR.G30340 Trifolium pratense HOM05D006685 ORTHO05D008244 1.4e-139 501.1 685 43.5
Lj4g0023849 Lotus japonicus HOM05D006685 ORTHO05D008244 5.5e-136 489.2 693 40.7
Ciclev10025347m.g Citrus clementina HOM05D006685 ORTHO05D008244 3.5e-135 486.5 551 50.5
Psat4g089520 Pisum sativum HOM05D006685 ORTHO05D008244 1.9e-133 480.7 688 41.1
Aqoxy6G00915 Aquilegia oxysepala HOM05D006685 ORTHO05D008244 1.8e-131 474.2 689 43.3
Hma1.2p1_0546F.1_g176200 Hydrangea macrophylla HOM05D006685 ORTHO05D008244 4.9e-129 466.1 575 46.1
Hund16306 Selenicereus undatus HOM05D006685 ORTHO05D008244 6.0e-127 459.1 683 40.6
Nn5g29383 Nelumbo nucifera HOM05D006685 ORTHO05D008244 1.3e-126 458.0 577 45.2
DCAR_025691 Daucus carota HOM05D006685 ORTHO05D008244 3.9e-126 456.4 681 40.7
Nitab4.5_0001014g0040 Nicotiana tabacum HOM05D006685 ORTHO05D008244 5.1e-126 456.1 684 40.4
vmacro05297 Vaccinium macrocarpon HOM05D006685 ORTHO05D008244 5.3e-123 446.0 683 40.6
Aa31LG4G18660 Aethionema arabicum HOM05D006685 ORTHO05D008244 6.9e-123 445.7 725 40.8
Sc03g0001280 Simmondsia chinensis HOM05D006685 ORTHO05D008244 2.0e-122 444.1 677 39.6
AT3G50430 Arabidopsis thaliana HOM05D006685 ORTHO05D008244 1.3e-121 441.4 689 39.8
Cc07_g05580 Coffea canephora HOM05D006685 ORTHO05D008244 2.2e-121 440.7 690 40.3
Thhalv10010194m.g Eutrema salsugineum HOM05D006685 ORTHO05D008244 1.1e-120 438.3 686 40.2
CAN.G836.36 Capsicum annuum HOM05D006685 ORTHO05D008244 1.4e-120 438.0 685 40.4
Sed0001332 Sechium edule HOM05D006685 ORTHO05D008244 3.2e-120 436.8 694 39.9
Nitab4.5_0000108g0340 Nicotiana tabacum HOM05D006685 ORTHO05D008244 2.1e-119 434.1 703 39.3
Sp5g11730 Schrenkiella parvula HOM05D006685 ORTHO05D008244 6.7e-118 429.1 686 39.9
Lj7A17G42 Lonicera japonica HOM05D006685 ORTHO05D008244 8.7e-118 428.7 574 46.2
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 8.7e-118 428.7 668 41.6
ClCG02G012840 Citrullus lanatus HOM05D006685 ORTHO05D008244 3.3e-117 426.8 705 39.4
CARHR159940 Cardamine hirsuta HOM05D006685 ORTHO05D008244 4.3e-117 426.4 684 40.1
PSO541G3044 Papaver somniferum HOM05D006685 ORTHO05D008244 5.7e-117 426.0 696 39.1
Haze_15195 Corylus avellana HOM05D006685 ORTHO05D008244 2.2e-116 424.1 743 39.0
CsaV3_2G016900 Cucumis sativus L. HOM05D006685 ORTHO05D008244 4.8e-116 422.9 688 39.2
MBI16_g19900_MAGBIO Magnolia biondii HOM05D006685 ORTHO05D008244 6.9e-115 419.1 722 39.5
AL5G30586 Arabidopsis lyrata HOM05D006685 ORTHO05D008244 9.1e-115 418.7 691 38.4
Sopen02g034940 Solanum pennellii HOM05D006685 ORTHO05D008244 9.1e-115 418.7 678 37.9
PGSC0003DMG402010073 Solanum tuberosum HOM05D006685 ORTHO05D008244 5.0e-113 412.9 682 38.4
Peaxi162Scf00993g00018 Petunia axillaris HOM05D006685 ORTHO05D008244 1.1e-112 411.8 585 40.7
BcaB05g23218 Brassica carinata HOM05D006685 ORTHO05D008244 1.1e-109 401.7 677 39.1
Migut.H00483 Erythranthe guttata HOM05D006685 ORTHO05D008244 5.3e-107 392.9 683 37.2
PGR119G2375 Punica granatum HOM05D006685 ORTHO05D008244 2.9e-105 387.1 691 37.0
THA.LOC104821263 Tarenaya hassleriana HOM05D006685 ORTHO05D008244 4.2e-104 383.3 619 39.7
A01p24130 Brassica napus HOM05D006685 ORTHO05D008244 1.2e-103 381.7 678 37.5
C01p29820 Brassica napus HOM05D006685 ORTHO05D008244 1.6e-103 381.3 679 37.4
Solyc02g090260.3 Solanum lycopersicum HOM05D006685 ORTHO05D008244 1.6e-103 381.3 676 35.8
BraA01t02325Z Brassica rapa HOM05D006685 ORTHO05D008244 2.1e-103 380.9 678 37.3
SGA_v2.0_scaffold204G41611 Striga asiatica HOM05D006685 ORTHO05D008244 8.8e-102 375.6 602 37.9
BolC1t02922H Brassica oleracea HOM05D006685 ORTHO05D008244 1.1e-101 375.2 682 37.1
HanXRQChr12g0378291 Helianthus annuus HOM05D006685 ORTHO05D008244 3.3e-101 373.6 682 37.4
MELO3C020890.2 Cucumis melo HOM05D006685 ORTHO05D008244 1.3e-100 371.7 741 36.2
Eucgr.I01015 Eucalyptus grandis HOM05D006685 ORTHO05D008244 7.0e-99 365.9 587 40.0
Ca_22212_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 2.9e-97 360.5 688 34.6
Ca_22230_v3 Cicer arietinum L. HOM05D006685 ORTHO05D008244 2.9e-97 360.5 688 34.6
Carub.0005s1677 Capsella rubella HOM05D006685 ORTHO05D008244 2.3e-94 350.9 499 41.5
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.8e-91 341.3 568 38.0
ECA246G1174 Erigeron canadensis HOM05D006685 ORTHO05D008244 1.8e-91 341.3 692 35.5
ATR0733G107 Amborella trichopoda HOM05D006685 ORTHO05D008244 1.9e-88 331.3 712 34.3
Cpa.g.sc76.25 Carica papaya HOM05D006685 ORTHO05D008244 8.0e-87 325.9 435 44.4
Lsat_1_v5_gn_3_92360 Lactuca sativa HOM05D006685 ORTHO05D008244 3.4e-85 320.5 692 32.4
AUR62003829 Chenopodium quinoa HOM05D006685 ORTHO05D008244 8.3e-84 315.8 423 41.6
BcaC09g50030 Brassica carinata HOM05D006685 ORTHO05D008244 3.1e-83 313.9 573 36.8
AUR62001974 Chenopodium quinoa HOM05D006685 ORTHO05D008244 4.9e-76 290.0 684 32.6
Zm00001eb209650 Zea mays HOM05D006685 ORTHO05D008244 4.1e-75 287.0 699 32.2
Zm00001eb209640 Zea mays HOM05D006685 ORTHO05D008244 2.7e-74 284.3 699 32.0
HPP92_017771 Vanilla planifolia HOM05D006685 ORTHO05D008244 3.5e-74 283.9 620 33.7
Os07g0120700 Oryza sativa ssp. japonica HOM05D006685 ORTHO05D008244 5.6e-72 276.6 695 32.4
Oeu003945.1 Olea europaea HOM05D006685 ORTHO05D008244 1.5e-69 268.5 354 42.1
arahy.Tifrunner.gnm1.ann1.5EE2XW Arachis hypogaea HOM05D006685 ORTHO05D008244 5.8e-69 266.5 401 40.9
PGR044G2727 Punica granatum HOM05D006685 ORTHO05D008244 7.5e-69 266.2 423 38.3
MD06G1092200 Malus domestica HOM05D006685 ORTHO05D008244 2.1e-63 248.1 325 46.2
CSS0022206 Camellia sinensis var. sinensis HOM05D006685 ORTHO05D008244 3.4e-61 240.7 325 45.8
unitig_749.g14219 Utricularia gibba HOM05D006685 ORTHO05D008244 1.7e-57 228.4 370 40.0
FAN28G0437 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.2e-47 195.7 196 53.6
CDE07G0460 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 3.9e-33 147.5 373 31.4
GSVIVG01036190001 Vitis vinifera HOM05D006685 ORTHO05D008244 6.9e-30 136.7 163 46.6
GSVIVG01002723001 Vitis vinifera HOM05D006685 ORTHO05D008244 4.5e-29 134.0 142 50.0
ATR0733G174 Amborella trichopoda HOM05D006685 ORTHO05D008244 7.6e-21 106.7 140 43.6
Prupe.5G239300 Prunus persica HOM05D006685 ORTHO05D008244 9.9e-21 106.3 96 60.4
CDE07G1850 Ceratophyllum demersum HOM05D006685 ORTHO05D008244 1.2e-18 99.4 222 32.4
FAN05G3710 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.6e-18 99.0 87 57.5
FAN08G2647 Fragaria x ananassa HOM05D006685 ORTHO05D008244 1.6e-18 99.0 87 57.5
SEGI_02281 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 3.5e-18 97.8 364 28.0
Mapoly0122s0032 Marchantia polymorpha HOM05D006685 ORTHO05D008244 3.0e-17 94.7 478 25.3
AagrBONN_evm.TU.Sc2ySwM_228.383 Anthoceros agrestis HOM05D039764 ORTHO05D031174 2.4e-14 85.1 313 26.2
Pp3c3_30590 Physcomitrium patens HOM05D006685 ORTHO05D008244 4.0e-14 84.3 211 29.9
SEGI_32623 Sequoiadendron giganteum HOM05D006685 ORTHO05D008244 3.5e-10 71.2 264 27.7
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 1.3e-07 62.8 51 54.9
FAN28G0452 Fragaria x ananassa HOM05D006685 ORTHO05D008244 4.8e-07 60.8 57 52.6
MD06G1092300 Malus domestica HOM05D006685 ORTHO05D008244 1.8e-06 58.9 43 62.8


User provided reference genes

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