Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G126600 Manihot esculenta HOM05D008581 ORTHO05D009966 1.8e-60 235.7 118 100.0
Manes.12G100000 Manihot esculenta HOM05D008581 ORTHO05D009966 3.4e-35 151.8 123 69.9
Ciclev10027209m.g Citrus clementina HOM05D008581 ORTHO05D009966 2.6e-19 99.0 123 54.5
Atru.chr3.365 Acer truncatum HOM05D008581 ORTHO05D009966 1.9e-17 92.8 126 46.8
Atru.chr3.367 Acer truncatum HOM05D008581 ORTHO05D009966 2.1e-16 89.4 121 46.3
Dinv39871 Davidia involucrata HOM05D008581 ORTHO05D009966 2.3e-15 85.9 121 46.3
Potri.007G042000 Populus trichocarpa HOM05D008581 ORTHO05D009966 5.6e-14 81.3 118 47.5
QL06p042091 Quercus lobata HOM05D008581 ORTHO05D009966 8.1e-13 77.4 117 45.3
Lj7C64T2 Lonicera japonica HOM05D008581 ORTHO05D009966 1.4e-12 76.6 120 44.2
QL06p042132 Quercus lobata HOM05D008581 ORTHO05D009966 1.4e-12 76.6 117 43.6
Cfa004000 Carpinus fangiana HOM05D008581 ORTHO05D009966 3.1e-12 75.5 119 42.0
QL06p042046 Quercus lobata HOM05D008581 ORTHO05D009966 3.1e-12 75.5 117 44.4
Potri.005G136800 Populus trichocarpa HOM05D008581 ORTHO05D009966 5.3e-12 74.7 119 47.9
Lj7C67G2 Lonicera japonica HOM05D008581 ORTHO05D009966 9.0e-12 73.9 120 44.2
Hma1.2p1_0200F.1_g086080 Hydrangea macrophylla HOM05D008581 ORTHO05D009966 1.5e-11 73.2 128 43.0
Peaxi162Scf00916g00007 Petunia axillaris HOM05D012691 ORTHO05D009966 2.6e-11 72.4 127 38.6
Nitab4.5_0000033g0450 Nicotiana tabacum HOM05D012691 ORTHO05D009966 3.4e-11 72.0 127 40.2
Sabra07G0037300 Salix brachista HOM05D008581 ORTHO05D009966 3.4e-11 72.0 122 44.3
Thecc.01G053400 Theobroma cacao HOM05D008581 ORTHO05D009966 3.4e-11 72.0 122 44.3
Hma1.2p1_1415F.1_g282020 Hydrangea macrophylla HOM05D008581 ORTHO05D009966 1.7e-10 69.7 132 40.2
Lj7C67T5 Lonicera japonica HOM05D008581 ORTHO05D009966 2.9e-10 68.9 120 41.7
Rhsim10G0119400 Rhododendron simsii HOM05D008581 ORTHO05D009966 1.1e-09 67.0 130 42.3
Lj7C67T3 Lonicera japonica HOM05D008581 ORTHO05D009966 1.9e-09 66.2 120 40.8
CiPaw.01G020500 Carya illinoinensis HOM05D015383 ORTHO05D009966 1.2e-08 63.5 130 38.5
Lalb_Chr05g0213241 Lupinus albus HOM05D008581 ORTHO05D011864 1.2e-08 63.5 127 40.9
Psat4g087360 Pisum sativum HOM05D008581 ORTHO05D011864 1.2e-08 63.5 120 41.7
CiPaw.01G021000 Carya illinoinensis HOM05D015383 ORTHO05D009966 1.6e-08 63.2 118 40.7
Nitab4.5_0001064g0010 Nicotiana tabacum HOM05D012691 ORTHO05D009966 2.1e-08 62.8 128 36.7
COL.COLO4_11388 Corchorus olitorius HOM05D008581 ORTHO05D009966 2.7e-08 62.4 126 38.9
Lj7C64T0 Lonicera japonica HOM05D008581 ORTHO05D009966 3.5e-08 62.0 112 42.0
DCAR_025723 Daucus carota HOM05D008581 ORTHO05D009966 1.3e-07 60.1 124 42.7
Lalb_Chr16g0378261 Lupinus albus HOM05D008581 ORTHO05D011864 1.8e-07 59.7 122 37.7
Lalb_Chr16g0378441 Lupinus albus HOM05D008581 ORTHO05D011864 1.8e-07 59.7 122 37.7
QL06p042147 Quercus lobata HOM05D008581 ORTHO05D009966 1.8e-07 59.7 114 41.2
Duzib264G0703 Durio zibethinus HOM05D008581 ORTHO05D009966 2.3e-07 59.3 118 37.3
Duzib264G0396 Durio zibethinus HOM05D013202 ORTHO05D009966 3.0e-07 58.9 118 39.8
ECA232G4194 Erigeron canadensis HOM05D008581 ORTHO05D009966 3.9e-07 58.5 41 63.4
BcaC03g18399 Brassica carinata HOM05D011091 ORTHO05D013198 6.7e-07 57.8 120 31.7
BolC2t12539H Brassica oleracea HOM05D011091 ORTHO05D013198 6.7e-07 57.8 120 31.7
Phvul.003G245400 Phaseolus vulgaris HOM05D008581 ORTHO05D009966 8.7e-07 57.4 123 34.1
Gohir.A02G159700 Gossypium hirsutum HOM05D013202 ORTHO05D009966 2.5e-06 55.8 55 54.5
Gohir.D03G021000 Gossypium hirsutum HOM05D013202 ORTHO05D009966 2.5e-06 55.8 118 39.0
Gohir.A02G159800 Gossypium hirsutum HOM05D013202 ORTHO05D009966 3.3e-06 55.5 55 54.5
Gohir.D03G020800 Gossypium hirsutum HOM05D013202 ORTHO05D009966 3.3e-06 55.5 55 54.5
Gorai.003G022000 Gossypium raimondii HOM05D013202 ORTHO05D009966 3.3e-06 55.5 55 54.5
A02p44390 Brassica napus HOM05D011091 ORTHO05D013198 4.3e-06 55.1 120 30.8
C02p64780 Brassica napus HOM05D011091 ORTHO05D013198 5.6e-06 54.7 120 30.8
CiPaw.01G020900 Carya illinoinensis HOM05D015383 ORTHO05D009966 5.6e-06 54.7 125 36.0
TPR.G745 Trifolium pratense HOM05D008581 ORTHO05D009966 5.6e-06 54.7 122 36.1
CiPaw.01G020000 Carya illinoinensis HOM05D015383 ORTHO05D009966 7.4e-06 54.3 120 33.3
Nitab4.5_0000310g0110 Nicotiana tabacum HOM05D012691 ORTHO05D009966 7.4e-06 54.3 126 32.5
Gorai.003G022200 Gossypium raimondii HOM05D013202 ORTHO05D009966 9.6e-06 53.9 55 52.7


User provided reference genes

Program Settings