Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G126300 Manihot esculenta HOM05D007434 ORTHO05D009541 1.6e-45 185.7 91 100.0
Manes.12G100300 Manihot esculenta HOM05D007434 ORTHO05D009541 1.3e-26 122.9 93 68.8
Potri.007G041400 Populus trichocarpa HOM05D007434 ORTHO05D009541 1.3e-21 106.3 93 64.5
COL.COLO4_11385 Corchorus olitorius HOM05D007434 ORTHO05D009541 1.6e-21 105.9 94 59.6
Thecc.01G053200 Theobroma cacao HOM05D007434 ORTHO05D009541 3.2e-17 91.7 96 54.2
Atru.chr3.395 Acer truncatum HOM05D007434 ORTHO05D013638 3.0e-15 85.1 99 48.5
FAN26G1295 Fragaria x ananassa HOM05D007434 ORTHO05D019139 3.9e-15 84.7 91 51.6
Oeu050758.1 Olea europaea HOM05D007434 ORTHO05D009541 3.9e-15 84.7 85 47.1
QL06p042201 Quercus lobata HOM05D007434 ORTHO05D009541 1.5e-14 82.8 83 55.4
FAN28G0171 Fragaria x ananassa HOM05D007434 ORTHO05D009541 3.3e-14 81.6 91 50.5
Gohir.A11G190600 Gossypium hirsutum HOM05D007434 ORTHO05D009541 4.3e-14 81.3 97 48.5
Gorai.007G211200 Gossypium raimondii HOM05D007434 ORTHO05D009541 5.7e-14 80.9 97 48.5
Gohir.D11G197400 Gossypium hirsutum HOM05D007434 ORTHO05D009541 7.4e-14 80.5 97 47.4
QL06p042177 Quercus lobata HOM05D007434 ORTHO05D009541 3.7e-13 78.2 85 47.1
FvH4_1g15720 Fragaria vesca HOM05D007434 ORTHO05D009541 1.1e-12 76.6 81 51.9
FAN19G1812 Fragaria x ananassa HOM05D007434 ORTHO05D019139 1.1e-12 76.6 81 51.9
Lalb_Chr05g0213221 Lupinus albus HOM05D007434 ORTHO05D009541 1.1e-12 76.6 89 48.3
Rhsim08G0102100 Rhododendron simsii HOM05D007434 ORTHO05D009541 1.1e-12 76.6 101 47.5
CiPaw.01G021300 Carya illinoinensis HOM05D007434 ORTHO05D009541 2.4e-12 75.5 93 52.7
Sabra07G0037000 Salix brachista HOM05D014707 ORTHO05D009541 1.5e-11 72.8 81 56.8
CiPaw.02G009300 Carya illinoinensis HOM05D007434 ORTHO05D009541 2.6e-11 72.0 92 43.5
Cpa.g.sc55.177 Carica papaya HOM05D007434 ORTHO05D009541 3.4e-11 71.6 115 39.1
Ciclev10027212m.g Citrus clementina HOM05D007434 ORTHO05D009541 3.4e-11 71.6 87 48.3
Nn1g05851 Nelumbo nucifera HOM05D007434 ORTHO05D009541 1.7e-10 69.3 101 47.5
Glyma.05G083900 Glycine max HOM05D007434 ORTHO05D009541 3.8e-10 68.2 82 51.2
Glyma.17G176500 Glycine max HOM05D007434 ORTHO05D009541 5.0e-10 67.8 82 50.0
Lalb_Chr16g0378251 Lupinus albus HOM05D007434 ORTHO05D009541 5.0e-10 67.8 94 41.5
Lalb_Chr16g0378431 Lupinus albus HOM05D007434 ORTHO05D009541 5.0e-10 67.8 94 41.5
Sed0002185 Sechium edule HOM05D007434 ORTHO05D009541 5.0e-10 67.8 97 46.4
TPR.G19007 Trifolium pratense HOM05D007434 ORTHO05D009541 5.0e-10 67.8 84 44.0
Sed0004872 Sechium edule HOM05D007434 ORTHO05D009541 1.1e-09 66.6 85 45.9
Sed0015330 Sechium edule HOM05D007434 ORTHO05D009541 1.9e-09 65.9 89 42.7
Aqoxy6G01382 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 2.5e-09 65.5 96 43.8
CiPaw.01G021200 Carya illinoinensis HOM05D007434 ORTHO05D009541 2.5e-09 65.5 88 42.0
Sc03g0001440 Simmondsia chinensis HOM05D012520 ORTHO05D013638 2.5e-09 65.5 96 41.7
CsaV3_6G043140 Cucumis sativus L. HOM05D007434 ORTHO05D009541 3.2e-09 65.1 90 47.8
Prupe.7G136100 Prunus persica HOM05D007434 ORTHO05D013638 4.2e-09 64.7 91 41.8
ClCG01G016720 Citrullus lanatus HOM05D007434 ORTHO05D009541 5.5e-09 64.3 81 49.4
DCAR_025721 Daucus carota HOM05D007434 ORTHO05D009541 5.5e-09 64.3 82 45.1
Nn5g30204 Nelumbo nucifera HOM05D007434 ORTHO05D009541 5.5e-09 64.3 96 38.5
Sabra07G0037300 Salix brachista HOM05D008581 ORTHO05D009966 9.4e-09 63.5 110 37.3
MELO3C007552.2 Cucumis melo HOM05D007434 ORTHO05D009541 1.2e-08 63.2 95 44.2
Phvul.003G245601 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 1.2e-08 63.2 82 46.3
Atru.chr3.394 Acer truncatum HOM05D007434 ORTHO05D009541 1.6e-08 62.8 87 44.8
CSS0004315 Camellia sinensis var. sinensis HOM05D035102 ORTHO05D016155 1.6e-08 62.8 96 40.6
Lj4g0023681 Lotus japonicus HOM05D007434 ORTHO05D009541 2.1e-08 62.4 95 43.2
Potri.007G041500 Populus trichocarpa HOM05D007434 ORTHO05D009541 2.1e-08 62.4 89 42.7
CANSAT01G1652 Cannabis sativa HOM05D007434 ORTHO05D009541 4.7e-08 61.2 101 41.6
CsaV3_6G043150 Cucumis sativus L. HOM05D007434 ORTHO05D009541 4.7e-08 61.2 95 44.2
ClCG01G016730 Citrullus lanatus HOM05D007434 ORTHO05D009541 6.1e-08 60.8 90 37.8
Glyma.01G184800 Glycine max HOM05D007434 ORTHO05D009541 1.0e-07 60.1 93 44.1
Nn1g05850 Nelumbo nucifera HOM05D007434 ORTHO05D009541 1.0e-07 60.1 101 39.6
Prupe.7G136000 Prunus persica HOM05D007434 ORTHO05D009541 1.0e-07 60.1 84 36.9
Ciclev10027106m.g Citrus clementina HOM05D007434 ORTHO05D009541 1.8e-07 59.3 88 43.2
Potri.007G042000 Populus trichocarpa HOM05D008581 ORTHO05D009966 1.8e-07 59.3 110 40.0
Gohir.A11G046200 Gossypium hirsutum HOM05D007434 ORTHO05D009541 3.0e-07 58.5 94 44.7
Atru.chr3.392 Acer truncatum HOM05D007434 ORTHO05D009541 6.7e-07 57.4 90 40.0
TAR628G0228 Trochodendron aralioides HOM05D007434 ORTHO05D016155 6.7e-07 57.4 89 37.1
BolC2t12536H Brassica oleracea HOM05D012520 ORTHO05D013638 8.8e-07 57.0 88 39.8
Lsat_1_v5_gn_4_167700 Lactuca sativa HOM05D007434 ORTHO05D009541 8.8e-07 57.0 81 43.2
Oeu049318.1 Olea europaea HOM05D007434 ORTHO05D009541 8.8e-07 57.0 63 50.8
Sp2g29840 Schrenkiella parvula HOM05D012520 ORTHO05D013638 1.1e-06 56.6 96 37.5
Aqoxy6G01380 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 1.5e-06 56.2 91 38.5
BcaC03g18397 Brassica carinata HOM05D012520 ORTHO05D013638 1.5e-06 56.2 98 40.8
Potri.005G136800 Populus trichocarpa HOM05D008581 ORTHO05D009966 1.5e-06 56.2 109 38.5
Cfa003999 Carpinus fangiana HOM05D017207 ORTHO05D010689 2.6e-06 55.5 89 39.3
Glyma.11G057300 Glycine max HOM05D007434 ORTHO05D009541 3.3e-06 55.1 83 39.8
arahy.Tifrunner.gnm1.ann1.T0173K Arachis hypogaea HOM05D007434 ORTHO05D009541 4.4e-06 54.7 84 46.4
Lj2g0001941 Lotus japonicus HOM05D007434 ORTHO05D009541 4.4e-06 54.7 101 38.6
Actinidia12059 Actinidia chinensis HOM05D027733 ORTHO05D030888 5.7e-06 54.3 71 42.3
Glyma.01G184900 Glycine max HOM05D007434 ORTHO05D009541 5.7e-06 54.3 83 41.0
Glyma.11G057400 Glycine max HOM05D007434 ORTHO05D009541 5.7e-06 54.3 97 37.1
Aqoxy6G01381 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 7.4e-06 53.9 85 42.4
A07p17070 Brassica napus HOM05D012520 ORTHO05D013638 7.4e-06 53.9 97 39.2
C07p24930 Brassica napus HOM05D012520 ORTHO05D013638 7.4e-06 53.9 97 39.2
BraA07t29434Z Brassica rapa HOM05D012520 ORTHO05D013638 7.4e-06 53.9 97 39.2
Haze_17565 Corylus avellana HOM05D016981 ORTHO05D016155 7.4e-06 53.9 101 35.6
Nn5g30206 Nelumbo nucifera HOM05D062348 ORTHO05D009966 7.4e-06 53.9 114 35.1
BcaC06g34755 Brassica carinata HOM05D012520 ORTHO05D013638 9.7e-06 53.5 97 39.2
BolC7t43022H Brassica oleracea HOM05D012520 ORTHO05D013638 9.7e-06 53.5 97 39.2


User provided reference genes

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