Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 5.2e-179 630.9 319 100.0
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 2.3e-126 456.1 324 73.5
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.0e-126 455.7 327 73.4
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 3.8e-113 412.1 324 64.8
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 2.7e-111 406.0 323 65.0
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.1e-109 400.6 320 65.6
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 3.3e-109 399.1 328 64.3
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 6.2e-108 394.8 329 63.5
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 9.0e-107 391.0 332 62.7
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.2e-105 386.3 282 67.7
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 2.9e-105 386.0 321 63.6
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 3.8e-105 385.6 272 69.5
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.4e-104 383.6 270 70.0
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 1.9e-104 383.3 267 70.4
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.9e-104 383.3 328 63.1
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 4.2e-104 382.1 297 64.0
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.3e-102 377.1 321 61.4
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 1.9e-101 373.2 313 60.7
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.3e-101 372.1 320 61.9
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 7.4e-101 371.3 321 61.4
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.1e-100 369.8 279 65.6
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 8.1e-100 367.9 273 63.7
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.8e-99 366.7 327 61.2
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.8e-99 366.7 327 61.2
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 1.8e-99 366.7 338 58.0
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.0e-99 365.5 321 60.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 5.3e-99 365.2 273 63.4
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 6.9e-99 364.8 316 58.2
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.2e-98 364.0 323 58.5
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 2.0e-98 363.2 295 59.3
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.8e-98 361.7 314 58.9
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 2.2e-97 359.8 319 61.8
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.9e-97 359.4 275 64.7
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 1.4e-96 357.1 293 61.8
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.9e-96 356.7 275 61.8
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 5.5e-96 355.1 311 58.8
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.2e-95 354.0 319 56.4
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.6e-95 353.6 270 64.8
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.6e-95 353.6 264 67.0
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 6.0e-95 351.7 309 57.6
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 3.0e-94 349.4 306 59.5
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 8.7e-94 347.8 336 57.7
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 1.1e-93 347.4 285 60.0
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 1.5e-93 347.1 278 60.1
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.5e-93 347.1 320 56.2
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.9e-93 346.7 279 60.2
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 4.3e-93 345.5 269 63.6
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 5.7e-93 345.1 272 62.9
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 9.6e-93 344.4 306 57.5
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 6.2e-92 341.7 268 60.4
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 1.4e-91 340.5 291 59.8
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 4.1e-91 339.0 274 63.1
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.1e-91 339.0 299 57.2
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 6.9e-91 338.2 320 56.6
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 9.0e-91 337.8 327 54.4
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 9.0e-91 337.8 268 62.3
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.2e-90 337.4 275 61.1
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.5e-90 337.0 329 57.4
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 2.0e-90 336.7 294 57.8
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.6e-90 336.3 290 56.9
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 3.4e-90 335.9 324 55.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.3e-89 334.0 324 55.2
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 1.3e-89 334.0 323 55.1
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 2.2e-89 333.2 279 59.1
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.9e-89 332.8 282 59.9
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 2.9e-89 332.8 312 56.1
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.9e-89 332.8 301 55.8
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 6.5e-89 331.6 328 54.0
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.1e-88 330.9 325 54.5
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 1.9e-88 330.1 324 53.7
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 3.2e-88 329.3 323 52.6
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 3.2e-88 329.3 322 54.0
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.2e-87 327.4 315 53.7
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 2.7e-87 326.2 306 56.2
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.3e-86 323.9 303 55.1
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.3e-86 323.2 325 52.0
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 3.9e-86 322.4 303 54.1
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.7e-86 321.2 268 60.4
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.1e-85 320.9 272 58.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.5e-85 319.7 277 57.0
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.5e-85 319.7 298 56.4
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.3e-85 319.3 322 52.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 4.3e-85 318.9 325 51.7
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 9.7e-85 317.8 293 56.7
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 9.7e-85 317.8 296 54.4
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.6e-84 317.0 323 52.9
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.8e-84 316.2 299 53.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.8e-84 316.2 304 54.6
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 3.7e-84 315.8 278 58.6
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 3.7e-84 315.8 321 51.7
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 4.8e-84 315.5 269 55.8
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.1e-83 314.3 269 55.4
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.2e-82 310.8 358 48.9
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.5e-82 310.5 316 51.9
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 2.6e-82 309.7 324 51.2
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.0e-81 305.4 308 53.2
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 3.2e-80 302.8 318 50.9
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 5.5e-80 302.0 311 54.0
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 6.1e-79 298.5 315 51.1
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 6.1e-79 298.5 324 49.1
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 5.1e-78 295.4 235 65.5
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.7e-76 290.4 318 49.7
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.1e-75 286.2 313 50.8
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.5e-74 283.9 268 52.6
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 3.4e-74 282.7 274 51.8
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.0e-73 281.2 303 48.8
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.2e-72 276.2 305 48.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.1e-71 273.5 268 53.4
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 6.1e-71 271.9 266 51.1
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.0e-70 269.6 307 46.9
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 3.9e-70 269.2 311 45.7
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.1e-69 267.7 205 61.0
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.4e-69 265.0 204 65.2
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 7.4e-69 265.0 204 65.2
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 9.7e-69 264.6 314 45.9
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.7e-68 263.8 311 44.7
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.4e-67 260.8 198 65.7
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.0e-65 254.6 264 49.2
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 3.8e-65 252.7 267 46.4
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 5.0e-65 252.3 318 48.1
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 6.1e-63 245.4 249 52.2
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.5e-61 238.4 238 49.6
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 1.3e-60 237.7 290 44.8
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.2e-58 231.1 220 54.5
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.2e-57 226.9 298 42.3
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 3.0e-54 216.5 243 44.9
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.0e-53 213.8 293 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.4e-51 207.6 264 42.4
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 7.7e-50 201.8 174 56.3
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.0e-49 201.4 261 40.6
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.0e-49 201.4 281 41.3
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 1.3e-49 201.1 259 40.9
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 2.9e-49 199.9 174 57.5
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.3e-44 182.2 262 37.8
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-43 181.0 265 36.6
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.4e-43 180.3 258 38.8
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.9e-34 149.1 206 39.8
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 3.4e-29 133.3 98 65.3
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.4e-21 106.7 109 58.7
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 3.4e-21 106.7 109 58.7
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 4.4e-21 106.3 126 38.9
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 3.7e-20 103.2 75 65.3
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 9.2e-19 98.6 92 56.5
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.2e-18 98.2 206 31.1
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 2.3e-17 94.0 96 44.8
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-14 84.7 128 33.6
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 6.8e-14 82.4 316 24.4
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.1e-11 75.1 263 25.9
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 4.6e-10 69.7 237 26.6


User provided reference genes

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