Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 9.1e-34 146.4 75 100.0
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.0e-29 132.9 75 92.0
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.0e-29 132.9 75 92.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 2.3e-29 131.7 75 90.7
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 1.5e-28 129.0 75 86.7
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.0e-28 128.6 75 88.0
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 4.4e-28 127.5 75 88.0
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 9.7e-28 126.3 75 85.3
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.3e-27 125.9 73 82.2
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.7e-27 125.6 73 82.2
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.4e-26 122.5 73 79.5
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 4.1e-26 120.9 75 82.7
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 2.0e-25 118.6 76 85.5
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 2.6e-25 118.2 75 78.7
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 2.6e-25 118.2 75 81.3
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 5.9e-25 117.1 75 80.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.9e-25 117.1 75 80.0
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 7.7e-25 116.7 75 78.7
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.3e-24 115.9 75 81.3
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 1.3e-24 115.9 75 78.7
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.7e-24 115.5 75 78.7
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.7e-24 115.5 75 78.7
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.2e-24 115.2 75 80.0
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 2.2e-24 115.2 75 77.3
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.9e-24 114.8 75 78.7
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 3.8e-24 114.4 75 81.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 5.0e-24 114.0 76 81.6
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 6.5e-24 113.6 75 78.7
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 8.5e-24 113.2 75 76.0
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.1e-23 112.8 75 73.3
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.9e-23 112.1 75 74.7
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.5e-23 111.7 75 78.7
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.5e-23 111.7 75 74.7
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 2.5e-23 111.7 75 77.3
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 4.2e-23 110.9 75 82.7
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 2.1e-22 108.6 75 73.3
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 8.0e-22 106.7 75 70.7
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.0e-21 106.3 75 73.3
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.4e-21 105.9 75 72.0
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 1.4e-21 105.9 75 72.0
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.3e-21 105.1 75 73.3
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.3e-21 105.1 75 73.3
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 5.2e-21 104.0 79 73.4
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 6.7e-21 103.6 75 74.7
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 6.7e-21 103.6 74 75.7
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 6.7e-21 103.6 75 74.7
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 8.8e-21 103.2 75 68.0
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.6e-20 101.7 75 69.3
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 3.3e-20 101.3 79 72.2
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 5.7e-20 100.5 75 65.3
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 7.4e-20 100.1 61 73.8
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.3e-19 99.4 73 72.6
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.3e-19 99.4 73 69.9
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 1.7e-19 99.0 75 64.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 2.2e-19 98.6 75 62.7
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 2.2e-19 98.6 75 68.0
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 2.8e-19 98.2 74 70.3
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 3.7e-19 97.8 75 66.7
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.7e-19 97.8 63 77.8
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 4.8e-19 97.4 75 64.0
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 6.3e-19 97.1 76 69.7
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 8.2e-19 96.7 75 65.3
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 8.2e-19 96.7 76 67.1
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.4e-18 95.9 75 62.7
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.4e-18 95.9 73 65.8
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.4e-18 95.9 80 63.8
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 2.4e-18 95.1 76 61.8
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 2.4e-18 95.1 78 62.8
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.1e-18 94.4 79 70.9
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 5.3e-18 94.0 75 68.0
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 7.0e-18 93.6 60 76.7
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.2e-17 92.8 71 62.0
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.2e-17 92.8 65 75.4
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.6e-17 92.4 79 65.8
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.0e-17 92.0 75 60.0
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.6e-17 91.7 66 66.7
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 5.9e-17 90.5 66 66.7
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 5.9e-17 90.5 66 66.7
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 5.9e-17 90.5 66 66.7
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 5.9e-17 90.5 66 66.7
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 5.9e-17 90.5 66 66.7
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 7.7e-17 90.1 73 61.6
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.0e-16 89.7 66 65.2
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.2e-16 88.6 82 61.0
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 66 65.2
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 2.2e-16 88.6 59 67.8
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.8e-16 87.8 78 59.0
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.0e-16 87.4 78 59.0
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 6.5e-16 87.0 70 62.9
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 6.5e-16 87.0 70 62.9
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 6.5e-16 87.0 78 59.0
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 8.5e-16 86.7 74 59.5
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.5e-16 86.7 78 57.7
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 8.5e-16 86.7 78 57.7
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 8.5e-16 86.7 78 56.4
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 1.1e-15 86.3 70 61.4
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 1.1e-15 86.3 78 59.0
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 1.1e-15 86.3 78 59.0
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.5e-15 85.9 78 60.3
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.5e-15 85.9 80 57.5
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.5e-15 85.1 79 57.0
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.5e-15 85.1 79 57.0
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.5e-15 85.1 79 58.2
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 3.2e-15 84.7 81 59.3
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 4.2e-15 84.3 80 55.0
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 4.2e-15 84.3 58 74.1
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 5.5e-15 84.0 75 54.7
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 7.2e-15 83.6 61 65.6
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 7.2e-15 83.6 81 56.8
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 9.4e-15 83.2 65 73.8
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 1.2e-14 82.8 74 58.1
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.2e-14 82.8 76 59.2
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.6e-14 82.4 79 58.2
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 1.6e-14 82.4 79 58.2
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 2.1e-14 82.0 61 65.6
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.1e-14 82.0 61 63.9
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.7e-14 81.6 75 52.0
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 3.6e-14 81.3 74 58.1
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 3.6e-14 81.3 45 80.0
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 4.7e-14 80.9 66 59.1
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 6.1e-14 80.5 57 70.2
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 6.1e-14 80.5 72 59.7
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 8.0e-14 80.1 75 54.7
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.0e-13 79.7 78 52.6
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.0e-13 79.7 54 66.7
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.4e-13 79.3 73 54.8
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.4e-13 79.3 80 56.2
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.8e-13 79.0 75 52.0
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 2.3e-13 78.6 58 74.1
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 3.0e-13 78.2 60 63.3
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 4.0e-13 77.8 50 68.0
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 6.8e-13 77.0 69 55.1
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.2e-12 76.3 70 57.1
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.2e-12 76.3 75 54.7
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.5e-12 75.9 56 69.6
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.6e-12 75.1 61 57.4
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-12 75.1 75 52.0
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 2.6e-12 75.1 77 53.2
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-12 74.7 75 52.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-12 74.7 77 51.9
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-12 74.7 77 51.9
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-12 74.7 77 51.9
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 3.4e-12 74.7 77 51.9
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 3.4e-12 74.7 77 51.9
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 5.7e-12 73.9 63 57.1
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 1.3e-11 72.8 74 51.4
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.3e-11 72.8 60 60.0
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 1.7e-11 72.4 52 55.8
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.7e-11 72.4 45 68.9
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.1e-10 69.7 54 57.4
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.3e-08 62.8 35 82.9
Nn1g04967 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.1e-07 59.7 49 63.3
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 1.6e-06 55.8 43 58.1


User provided reference genes

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