Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G115300 Manihot esculenta HOM05D002637 ORTHO05D009046 4.7e-86 321.2 170 100.0
Manes.12G109800 Manihot esculenta HOM05D002637 ORTHO05D009046 3.0e-53 212.2 155 70.3
Migut.B01543 Erythranthe guttata HOM05D002637 ORTHO05D009046 6.6e-48 194.5 166 56.6
SGA_v2.0_scaffold153G36910 Striga asiatica HOM05D002637 ORTHO05D008095 4.3e-47 191.8 166 57.8
Actinidia33504 Actinidia chinensis HOM05D002637 ORTHO05D009046 3.6e-46 188.7 167 57.5
vmacro21056 Vaccinium macrocarpon HOM05D002637 ORTHO05D009046 1.3e-43 180.3 167 55.1
Prupe.2G128200 Prunus persica HOM05D002637 ORTHO05D009046 1.7e-43 179.9 166 53.6
TWI53G0102 Tripterygium wilfordii HOM05D002637 ORTHO05D009046 1.4e-42 176.8 166 56.0
PGR042G3993 Punica granatum HOM05D002637 ORTHO05D009046 1.6e-41 173.3 165 55.2
Dinv43628 Davidia involucrata HOM05D002637 ORTHO05D009046 1.3e-40 170.2 166 53.0
Potri.007G051200 Populus trichocarpa HOM05D002637 ORTHO05D009046 1.3e-40 170.2 160 53.8
MD07G1104600 Malus domestica HOM05D002637 ORTHO05D009046 1.7e-40 169.9 166 52.4
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 3.0e-40 169.1 157 52.9
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 1.9e-39 166.4 163 54.6
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 3.3e-39 165.6 163 53.4
DCAR_029750 Daucus carota HOM05D002637 ORTHO05D000193 7.3e-39 164.5 156 52.6
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 9.5e-39 164.1 163 52.8
MD07G1105300 Malus domestica HOM05D002637 ORTHO05D009046 1.2e-38 163.7 166 51.2
EL10Ac1g00772 Beta vulgaris HOM05D002637 ORTHO05D009046 2.1e-38 162.9 166 50.0
Cfa011083 Carpinus fangiana HOM05D002637 ORTHO05D009046 2.1e-38 162.9 143 58.0
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 2.8e-38 162.5 152 53.9
unitig_8.g3841 Utricularia gibba HOM05D002637 ORTHO05D008095 2.8e-38 162.5 155 51.6
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 3.6e-38 162.2 163 52.1
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 4.7e-38 161.8 163 51.5
Lsat_1_v5_gn_4_46620 Lactuca sativa HOM05D002637 ORTHO05D009046 4.7e-38 161.8 167 49.7
MSTRG.17133 Avicennia marina HOM05D002637 ORTHO05D009046 8.1e-38 161.0 166 50.0
Atru.chr3.227 Acer truncatum HOM05D002637 ORTHO05D009046 1.1e-37 160.6 168 51.8
Eucgr.E01572 Eucalyptus grandis HOM05D002637 ORTHO05D009046 1.1e-37 160.6 154 53.9
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 1.8e-37 159.8 158 53.2
ECA234G1562 Erigeron canadensis HOM05D002637 ORTHO05D009046 1.8e-37 159.8 166 47.6
TAR629G0766 Trochodendron aralioides HOM05D002637 ORTHO05D009046 2.3e-37 159.5 157 52.2
Cc02_g25010 Coffea canephora HOM05D002637 ORTHO05D009046 4.0e-37 158.7 153 49.0
Haze_02819 Corylus avellana HOM05D002637 ORTHO05D009046 5.2e-37 158.3 142 56.3
Aqoxy3G02748 Aquilegia oxysepala HOM05D002637 ORTHO05D009046 1.2e-36 157.1 163 51.5
BcaNung05079 Brassica carinata HOM05D002637 ORTHO05D009046 4.4e-36 155.2 163 50.9
Oeu063229.1 Olea europaea HOM05D002637 ORTHO05D009046 4.4e-36 155.2 154 46.8
TPR.G12142 Trifolium pratense HOM05D002637 ORTHO05D009046 2.9e-35 152.5 162 49.4
Duzib187G0274 Durio zibethinus HOM05D002637 ORTHO05D009046 4.9e-35 151.8 157 51.0
HanXRQChr16g0520331 Helianthus annuus HOM05D002637 ORTHO05D009046 4.9e-35 151.8 166 45.2
Duzib147G1684 Durio zibethinus HOM05D002637 ORTHO05D009046 8.3e-35 151.0 155 50.3
A01p01510 Brassica napus HOM05D002637 ORTHO05D009046 1.1e-34 150.6 170 48.8
BraA01t00144Z Brassica rapa HOM05D002637 ORTHO05D009046 1.1e-34 150.6 170 49.4
Thecc.01G067000 Theobroma cacao HOM05D002637 ORTHO05D009046 1.1e-34 150.6 156 50.6
C01p01670 Brassica napus HOM05D002637 ORTHO05D009046 1.4e-34 150.2 175 48.6
BolC1t00161H Brassica oleracea HOM05D002637 ORTHO05D009046 1.4e-34 150.2 175 48.6
Sc02g0003060 Simmondsia chinensis HOM05D002637 ORTHO05D009046 1.4e-34 150.2 141 52.5
THA.LOC104807614 Tarenaya hassleriana HOM05D002637 ORTHO05D009046 1.4e-34 150.2 168 50.6
Lj1g0023703 Lotus japonicus HOM05D002637 ORTHO05D009046 7.1e-34 147.9 159 47.8
Psat3g194760 Pisum sativum HOM05D002637 ORTHO05D009046 9.2e-34 147.5 148 49.3
QL04p030668 Quercus lobata HOM05D002637 ORTHO05D009046 1.2e-33 147.1 167 46.7
Lj3g0027924 Lotus japonicus HOM05D002637 ORTHO05D009046 3.5e-33 145.6 169 46.2
Medtr8g006765 Medicago truncatula HOM05D002637 ORTHO05D009046 3.5e-33 145.6 150 48.7
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 3.5e-33 145.6 143 52.4
CiPaw.14G021200 Carya illinoinensis HOM05D002637 ORTHO05D009046 6.0e-33 144.8 164 48.8
COL.COLO4_11517 Corchorus olitorius HOM05D002637 ORTHO05D009046 6.0e-33 144.8 156 49.4
Psat4g225240 Pisum sativum HOM05D002637 ORTHO05D009046 6.0e-33 144.8 164 45.1
FAN03G2438 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.0e-32 144.1 151 46.4
FAN06G1198 Fragaria x ananassa HOM05D000001 ORTHO05D009896 1.0e-32 144.1 153 46.4
TAR629G0936 Trochodendron aralioides HOM05D002637 ORTHO05D009046 1.7e-32 143.3 166 48.2
TPR.G33150 Trifolium pratense HOM05D002637 ORTHO05D009046 2.3e-32 142.9 149 45.6
FAN06G2425 Fragaria x ananassa HOM05D000001 ORTHO05D009896 3.0e-32 142.5 151 46.4
Medtr4g094628 Medicago truncatula HOM05D002637 ORTHO05D009046 3.0e-32 142.5 167 43.7
Gorai.011G107300 Gossypium raimondii HOM05D002637 ORTHO05D009046 3.9e-32 142.1 156 44.9
Lalb_Chr13g0290561 Lupinus albus HOM05D002637 ORTHO05D009046 6.6e-32 141.4 167 44.3
Nn1g00869 Nelumbo nucifera HOM05D002637 ORTHO05D009046 8.6e-32 141.0 157 44.6
Sabra07G0045200 Salix brachista HOM05D002328 ORTHO05D002433 8.6e-32 141.0 172 46.5
BcaNung02947 Brassica carinata HOM05D002637 ORTHO05D009046 1.9e-31 139.8 160 46.9
FvH4_7g09940 Fragaria vesca HOM05D002637 ORTHO05D009046 3.3e-31 139.0 147 46.3
Ca_14060_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 5.6e-31 138.3 164 42.7
PSO063G5174 Papaver somniferum HOM05D002637 ORTHO05D009046 1.2e-30 137.1 146 48.6
Manes.13G115400 Manihot esculenta HOM05D002637 ORTHO05D009046 2.8e-30 136.0 161 47.2
FAN01G0925 Fragaria x ananassa HOM05D002637 ORTHO05D009046 4.7e-30 135.2 151 43.0
Nitab4.5_0003696g0080 Nicotiana tabacum HOM05D002637 ORTHO05D009046 1.1e-29 134.0 157 47.8
AUR62023418 Chenopodium quinoa HOM05D000001 ORTHO05D009896 1.4e-29 133.7 154 46.8
TAR629G3341 Trochodendron aralioides HOM05D002637 ORTHO05D009046 2.3e-29 132.9 132 52.3
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 1.2e-28 130.6 158 43.7
Aa31LG6G14300 Aethionema arabicum HOM05D002637 ORTHO05D009046 1.5e-28 130.2 162 48.1
Phvul.010G051600 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 5.8e-28 128.3 169 40.2
arahy.Tifrunner.gnm1.ann1.P225XX Arachis hypogaea HOM05D002637 ORTHO05D009046 9.9e-28 127.5 158 40.5
arahy.Tifrunner.gnm1.ann1.TJ44DN Arachis hypogaea HOM05D002637 ORTHO05D009046 6.4e-27 124.8 154 40.9
A01p01520 Brassica napus HOM05D002637 ORTHO05D009046 8.4e-27 124.4 148 47.3
BraA01t00145Z Brassica rapa HOM05D002637 ORTHO05D009046 8.4e-27 124.4 148 47.3
VMungo0331G2001 Vigna mungo HOM05D002637 ORTHO05D009046 1.1e-26 124.0 169 38.5
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 1.9e-26 123.2 168 37.5
Rhsim01G0139600 Rhododendron simsii HOM05D002637 ORTHO05D009046 4.1e-26 122.1 121 57.0
Ca_04041_v3 Cicer arietinum L. HOM05D002637 ORTHO05D008095 7.1e-26 121.3 152 40.8
Sopen01g036190 Solanum pennellii HOM05D002637 ORTHO05D009046 3.5e-25 119.0 170 40.6
RcHm_v2.0_Chr1g0347501 Rosa chinensis HOM05D002637 ORTHO05D009046 6.6e-24 114.8 150 39.3
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 3.3e-23 112.5 154 40.9
Glyma.07G113000 Glycine max HOM05D002637 ORTHO05D009046 4.7e-22 108.6 139 41.0
Lj7A545G96 Lonicera japonica HOM05D002637 ORTHO05D009046 1.4e-21 107.1 129 46.5
AUR62013735 Chenopodium quinoa HOM05D002637 ORTHO05D009046 3.1e-21 105.9 124 46.8
FAN10G0921 Fragaria x ananassa HOM05D002637 ORTHO05D009046 8.9e-21 104.4 146 40.4
Ca_24158_v3 Cicer arietinum L. HOM05D002637 ORTHO05D009046 9.9e-20 100.9 107 45.8
GSVIVG01018261001 Vitis vinifera HOM05D002637 ORTHO05D009046 1.3e-19 100.5 123 44.7
Ca_14062_v3 Cicer arietinum L. HOM05D000534 ORTHO05D009046 2.9e-19 99.4 106 45.3
Peaxi162Scf00030g00043 Petunia axillaris HOM05D002637 ORTHO05D009046 1.9e-18 96.7 109 44.0
SalBow5G5579 Salvia bowleyana HOM05D002637 ORTHO05D009046 5.4e-18 95.1 157 37.6
FAN10G1525 Fragaria x ananassa HOM05D002637 ORTHO05D009046 1.6e-17 93.6 174 35.6
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 1.7e-16 90.1 146 37.7
Phvul.008G046000 Phaseolus vulgaris HOM05D002637 ORTHO05D009046 1.7e-16 90.1 108 42.6
BolC7t46653H Brassica oleracea HOM05D002637 ORTHO05D009046 8.7e-16 87.8 140 39.3
Zm00001eb230930 Zea mays HOM05D002637 ORTHO05D009046 4.3e-15 85.5 155 34.8
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 2.1e-14 83.2 147 32.0
BcaNung03659 Brassica carinata HOM05D002637 ORTHO05D009046 1.4e-13 80.5 98 45.9
TPR.G39072 Trifolium pratense HOM05D002637 ORTHO05D009046 2.4e-13 79.7 140 35.7
A03p65120 Brassica napus HOM05D002637 ORTHO05D009046 5.3e-13 78.6 108 42.6
Nitab4.5_0003553g0040 Nicotiana tabacum HOM05D002637 ORTHO05D009046 6.9e-13 78.2 166 34.9
HPP92_005363 Vanilla planifolia HOM05D002637 ORTHO05D009046 6.9e-13 78.2 138 33.3
EL10Ac1g02043 Beta vulgaris HOM05D002637 ORTHO05D009046 1.2e-12 77.4 61 50.8
GSVIVG01018259001 Vitis vinifera HOM05D002637 ORTHO05D009046 1.2e-12 77.4 109 43.1
BraA03t15571Z Brassica rapa HOM05D002637 ORTHO05D009046 1.5e-12 77.0 107 42.1
A01p01540 Brassica napus HOM05D002637 ORTHO05D009046 2.6e-12 76.3 96 45.8
CSS0047370 Camellia sinensis var. sinensis HOM05D002637 ORTHO05D009046 2.6e-12 76.3 85 48.2
Medtr7g407110 Medicago truncatula HOM05D002637 ORTHO05D008095 5.8e-12 75.1 71 52.1
BraA01t00146Z Brassica rapa HOM05D002637 ORTHO05D016052 7.6e-12 74.7 93 47.3
Os02g0126600 Oryza sativa ssp. japonica HOM05D002637 ORTHO05D009046 3.8e-11 72.4 142 30.3
VMungo1383G0183 Vigna mungo HOM05D002637 ORTHO05D009046 4.9e-11 72.0 93 38.7
Atru.chr3.216 Acer truncatum HOM05D002637 ORTHO05D009046 1.2e-09 67.4 66 53.0
Prupe.2G128500 Prunus persica HOM05D000001 ORTHO05D009896 1.6e-09 67.0 154 30.5
RcHm_v2.0_Chr1g0347531 Rosa chinensis HOM05D002637 ORTHO05D009046 1.0e-08 64.3 79 45.6
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 1.3e-08 63.9 119 31.9
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 2.3e-08 63.2 146 26.7
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 5.1e-08 62.0 119 31.1
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 5.1e-08 62.0 128 34.4
Glyma.18G252700 Glycine max HOM05D002637 ORTHO05D009046 8.7e-08 61.2 78 39.7
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 1.5e-07 60.5 142 27.5
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 1.5e-07 60.5 128 32.0
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 1.5e-07 60.5 123 30.9
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.5e-07 60.5 142 28.2
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 1.9e-07 60.1 142 27.5
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 1.9e-07 60.1 132 30.3
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 1.9e-07 60.1 145 27.6
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 2.5e-07 59.7 118 32.2
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 2.5e-07 59.7 139 28.1
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 2.5e-07 59.7 139 28.1
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 2.5e-07 59.7 122 30.3
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 4.3e-07 58.9 120 32.5
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 4.3e-07 58.9 125 32.8
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 4.3e-07 58.9 142 27.5
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 4.3e-07 58.9 142 27.5
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 5.6e-07 58.5 142 26.8
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 5.6e-07 58.5 131 30.5
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 5.6e-07 58.5 145 28.3
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 5.6e-07 58.5 142 27.5
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 7.4e-07 58.2 144 26.4
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 7.4e-07 58.2 118 31.4
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 7.4e-07 58.2 142 27.5
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 7.4e-07 58.2 118 28.8
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 7.4e-07 58.2 130 29.2
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 9.6e-07 57.8 117 31.6
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 9.6e-07 57.8 134 29.9
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 9.6e-07 57.8 128 28.9
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 9.6e-07 57.8 123 33.3
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 1.3e-06 57.4 119 29.4
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 1.3e-06 57.4 143 26.6
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.3e-06 57.4 155 25.8
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 1.6e-06 57.0 119 31.1
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 1.6e-06 57.0 118 29.7
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 2.1e-06 56.6 144 27.8
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 2.1e-06 56.6 120 30.0
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 2.1e-06 56.6 137 27.0
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 2.1e-06 56.6 134 29.9
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 2.1e-06 56.6 140 26.4
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 2.1e-06 56.6 143 28.0
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 2.1e-06 56.6 144 29.9
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 2.8e-06 56.2 122 28.7
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 2.8e-06 56.2 122 28.7
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 2.8e-06 56.2 147 30.6
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 2.8e-06 56.2 119 31.1
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 3.7e-06 55.8 144 25.7
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 3.7e-06 55.8 142 26.8
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 3.7e-06 55.8 128 27.3
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 3.7e-06 55.8 140 28.6
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 3.7e-06 55.8 118 28.8
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 4.8e-06 55.5 120 30.8
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 4.8e-06 55.5 118 29.7
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 4.8e-06 55.5 120 28.3
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 4.8e-06 55.5 119 31.9
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 6.2e-06 55.1 143 32.2
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 6.2e-06 55.1 117 29.9
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 8.1e-06 54.7 118 30.5


User provided reference genes

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