Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 2.3e-162 575.9 371 100.0
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.8e-75 286.6 390 53.6
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 3.6e-75 286.2 392 53.3
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 3.5e-70 269.6 395 51.9
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 1.0e-69 268.1 388 61.6
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.7e-64 250.8 388 52.1
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 9.3e-63 245.0 360 53.6
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 3.3e-60 236.5 379 50.9
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 4.3e-60 236.1 326 51.8
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 4.3e-60 236.1 326 51.8
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 1.3e-59 234.6 394 45.2
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.4e-58 231.1 358 45.5
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 1.3e-56 224.6 370 53.0
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 1.7e-56 224.2 362 45.6
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 8.4e-56 221.9 363 43.5
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.2e-55 219.9 349 49.3
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 9.3e-55 218.4 385 45.7
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.9e-54 215.3 349 49.3
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 3.9e-53 213.0 383 51.4
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 5.1e-53 212.6 349 48.7
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 4.5e-49 199.5 382 42.7
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 5.8e-49 199.1 352 47.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.8e-49 199.1 384 45.8
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.9e-47 194.1 389 44.5
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.1e-47 192.2 384 44.8
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 2.3e-45 187.2 360 43.6
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 5.6e-44 182.6 383 47.8
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 9.6e-44 181.8 362 40.3
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 9.6e-44 181.8 376 43.9
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 2.8e-43 180.3 329 47.4
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 6.2e-43 179.1 331 45.0
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 4.0e-42 176.4 363 37.7
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 9.0e-42 175.3 367 38.4
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 1.5e-41 174.5 356 44.1
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.5e-41 172.9 365 41.9
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 6.5e-40 169.1 365 41.4
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 1.9e-39 167.5 348 48.3
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 5.5e-39 166.0 345 41.7
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 2.1e-38 164.1 373 40.8
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 3.5e-38 163.3 344 44.2
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.8e-37 161.0 360 37.5
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 1.8e-37 161.0 334 40.1
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.9e-36 157.5 370 43.8
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 5.7e-36 156.0 372 42.7
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.3e-35 154.8 361 43.2
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 2.1e-35 154.1 358 41.3
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 8.2e-35 152.1 376 37.8
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 3.1e-34 150.2 377 37.7
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 1.5e-33 147.9 305 46.6
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 4.5e-33 146.4 333 40.2
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 5.9e-33 146.0 198 57.1
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.3e-32 144.8 374 32.9
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 2.2e-32 144.1 352 38.9
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 5.0e-32 142.9 357 41.2
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 5.0e-32 142.9 379 42.7
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.4e-31 141.4 371 41.0
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 7.2e-31 139.0 371 41.5
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 1.6e-30 137.9 368 32.3
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 7.9e-30 135.6 370 33.8
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 1.0e-29 135.2 384 35.4
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.0e-29 135.2 347 34.3
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 1.3e-29 134.8 335 35.5
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 2.3e-29 134.0 367 34.3
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 3.9e-29 133.3 335 35.2
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 2.5e-28 130.6 346 32.7
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.3e-27 128.3 338 34.3
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 4.8e-27 126.3 366 39.6
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 6.3e-27 125.9 369 37.1
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 1.8e-26 124.4 366 39.3
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.8e-26 124.4 371 37.2
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 2.4e-26 124.0 366 39.3
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 3.1e-26 123.6 367 38.1
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 3.1e-26 123.6 362 43.6
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 5.3e-26 122.9 244 48.0
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 9.1e-26 122.1 331 32.3
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 1.2e-25 121.7 378 37.3
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 3.4e-25 120.2 322 47.5
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 3.4e-25 120.2 336 36.3
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 5.9e-25 119.4 403 29.3
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.9e-25 119.4 313 34.5
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 5.9e-25 119.4 367 39.0
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 5.0e-24 116.3 345 37.7
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.1e-23 115.2 313 33.2
Phvul.003G237500 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 7.2e-23 112.5 344 40.4
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 9.4e-23 112.1 345 38.0
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 9.4e-23 112.1 372 30.9
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 4.6e-22 109.8 316 32.3
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 4.6e-22 109.8 360 39.4
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 1.0e-21 108.6 345 38.8
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.3e-21 107.5 345 36.2
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.3e-21 107.5 345 36.2
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 3.9e-21 106.7 345 36.2
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 5.1e-21 106.3 356 34.6
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 1.1e-20 105.1 364 35.7
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 1.5e-20 104.8 371 36.7
CSS0012811 Camellia sinensis var. sinensis HOM05D005407 ORTHO05D006544 7.4e-20 102.4 225 44.9
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 7.4e-20 102.4 350 30.9
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 9.7e-20 102.1 348 37.1
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 1.7e-19 101.3 360 33.6
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 6.3e-19 99.4 365 32.9
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 3.1e-18 97.1 311 33.4
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 4.1e-18 96.7 365 31.0
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 9.1e-18 95.5 152 49.3
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 1.2e-17 95.1 374 36.1
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 1.5e-17 94.7 200 36.0
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 3.4e-17 93.6 285 38.6
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 3.4e-17 93.6 337 36.5
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 7.7e-17 92.4 204 37.3
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 1.0e-16 92.0 345 38.6
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 2.2e-16 90.9 345 38.6
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 2.9e-16 90.5 345 38.6
CDE07G1425 Ceratophyllum demersum HOM05D006600 ORTHO05D008446 6.5e-16 89.4 196 42.3
MELO3C020864.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.1e-15 88.6 331 35.0
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 4.2e-15 86.7 210 35.2
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 5.5e-15 86.3 215 34.4
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 9.4e-15 85.5 209 34.0
CsaV3_2G016540 Cucumis sativus L. HOM05D005407 ORTHO05D006544 1.6e-14 84.7 333 35.4
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.6e-14 84.7 157 39.5
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 2.1e-14 84.3 246 40.2
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 3.6e-14 83.6 209 34.4
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 6.1e-14 82.8 236 34.3
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 1.8e-13 81.3 197 33.5
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 3.9e-13 80.1 208 32.7
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 3.9e-13 80.1 208 32.7
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 6.7e-13 79.3 351 37.6
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 7.4e-12 75.9 370 33.5
Ah.02g125610 Amaranthus hybridus HOM05D005407 ORTHO05D006544 9.7e-12 75.5 376 27.1
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 1.3e-11 75.1 205 34.1
ClCG02G012410 Citrullus lanatus HOM05D005407 ORTHO05D006544 3.7e-11 73.6 226 43.8
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 1.1e-10 72.0 332 30.1
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 1.8e-10 71.2 298 29.2
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 4.1e-10 70.1 200 33.0
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 5.3e-10 69.7 218 33.5
Nitab4.5_0000419g0140 Nicotiana tabacum HOM05D005407 ORTHO05D006544 2.0e-09 67.8 215 39.5
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 1.0e-08 65.5 211 34.1
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.7e-06 57.4 111 36.9
Nitab4.5_0005127g0050 Nicotiana tabacum HOM05D005407 ORTHO05D006544 4.7e-06 56.6 85 44.7
CDE01G0807 Ceratophyllum demersum HOM05D042405 ORTHO05D043904 6.1e-06 56.2 212 24.5
HanXRQChr11g0322471 Helianthus annuus HOM05D005407 ORTHO05D006544 6.1e-06 56.2 359 32.9
SEGI_38417 Sequoiadendron giganteum HOM05D019616 ORTHO05D023140 8.0e-06 55.8 228 28.5


User provided reference genes

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