Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G112700 Manihot esculenta HOM05D007513 ORTHO05D008148 1.0e-51 206.5 106 100.0
Actinidia03699 Actinidia chinensis HOM05D007513 ORTHO05D008148 2.9e-25 118.6 104 61.5
Potri.009G004400 Populus trichocarpa HOM05D007513 ORTHO05D008148 4.9e-25 117.9 104 63.5
Dinv04064 Davidia involucrata HOM05D007513 ORTHO05D008148 1.2e-23 113.2 104 61.5
Dinv26918 Davidia involucrata HOM05D007513 ORTHO05D008148 6.0e-23 110.9 104 61.5
CSS0003656 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.3e-22 109.8 88 67.0
CSS0045444 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 1.3e-22 109.8 88 67.0
ClCG10G015420 Citrullus lanatus HOM05D007513 ORTHO05D008148 1.5e-21 106.3 72 76.4
TWI09G0373 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.5e-21 106.3 76 72.4
CsaV3_3G041080 Cucumis sativus L. HOM05D007513 ORTHO05D008148 1.9e-21 105.9 75 70.7
Ciclev10023109m.g Citrus clementina HOM05D007513 ORTHO05D008148 2.5e-21 105.5 77 71.4
HanXRQChr08g0219071 Helianthus annuus HOM05D007513 ORTHO05D008148 7.3e-21 104.0 78 66.7
CANSAT01G0833 Cannabis sativa HOM05D007513 ORTHO05D008148 9.5e-21 103.6 73 71.2
Atru.chr3.153 Acer truncatum HOM05D007513 ORTHO05D008148 1.2e-20 103.2 84 64.3
TWI73G0368 Tripterygium wilfordii HOM05D007513 ORTHO05D008148 1.2e-20 103.2 104 59.6
HanXRQChr08g0219141 Helianthus annuus HOM05D007513 ORTHO05D008148 2.8e-20 102.1 78 65.4
Eucgr.A01208 Eucalyptus grandis HOM05D007513 ORTHO05D008148 3.6e-20 101.7 88 64.8
Rhsim11G0028000 Rhododendron simsii HOM05D007513 ORTHO05D008148 3.6e-20 101.7 103 56.3
Atru.chr3.182 Acer truncatum HOM05D007513 ORTHO05D008148 4.7e-20 101.3 84 67.9
Hma1.2p1_0730F.1_g209790 Hydrangea macrophylla HOM05D007513 ORTHO05D008148 4.7e-20 101.3 79 68.4
CiPaw.02G003300 Carya illinoinensis HOM05D007513 ORTHO05D008148 1.4e-19 99.8 80 61.2
ECA233G3995 Erigeron canadensis HOM05D007513 ORTHO05D008148 1.8e-19 99.4 77 63.6
CSS0005454 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.3e-19 99.0 79 67.1
CSS0011696 Camellia sinensis var. sinensis HOM05D007513 ORTHO05D008148 2.3e-19 99.0 79 67.1
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.1e-19 98.6 66 72.7
Sed0010624 Sechium edule HOM05D007513 ORTHO05D008148 4.0e-19 98.2 80 66.2
vmacro14398 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 5.2e-19 97.8 68 72.1
Duzib264G1124 Durio zibethinus HOM05D007513 ORTHO05D008148 8.9e-19 97.1 59 81.4
Lsat_1_v5_gn_8_17020 Lactuca sativa HOM05D007513 ORTHO05D008148 1.2e-18 96.7 64 73.4
Medtr4g088715 Medicago truncatula HOM05D007513 ORTHO05D008148 1.2e-18 96.7 80 61.2
Thecc.01G071100 Theobroma cacao HOM05D007513 ORTHO05D008148 1.2e-18 96.7 61 78.7
Lsat_1_v5_gn_8_19701 Lactuca sativa HOM05D007513 ORTHO05D008148 1.5e-18 96.3 106 51.9
unitig_0.g544 Utricularia gibba HOM05D007513 ORTHO05D008148 3.4e-18 95.1 68 67.6
Gohir.D03G027900 Gossypium hirsutum HOM05D007513 ORTHO05D008148 4.4e-18 94.7 85 58.8
Sc16g0003000 Simmondsia chinensis HOM05D007513 ORTHO05D008148 5.8e-18 94.4 75 65.3
MD15G1295400 Malus domestica HOM05D007513 ORTHO05D008148 7.5e-18 94.0 84 60.7
MD02G1183800 Malus domestica HOM05D007513 ORTHO05D008148 1.7e-17 92.8 80 62.5
GSVIVG01023476001 Vitis vinifera HOM05D007513 ORTHO05D008148 2.2e-17 92.4 74 62.2
Cc04_g16170 Coffea canephora HOM05D007513 ORTHO05D008148 3.7e-17 91.7 64 68.8
TPR.G24448 Trifolium pratense HOM05D007513 ORTHO05D008148 3.7e-17 91.7 73 63.0
Nitab4.5_0000714g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 4.9e-17 91.3 100 51.0
AUR62016920 Chenopodium quinoa HOM05D007513 ORTHO05D008148 8.3e-17 90.5 61 73.8
SGA_v2.0_scaffold486G52374 Striga asiatica HOM05D007513 ORTHO05D008148 1.1e-16 90.1 77 59.7
CDE07G2080 Ceratophyllum demersum HOM05D007513 ORTHO05D008148 3.2e-16 88.6 71 64.8
SalBow6G0964 Salvia bowleyana HOM05D007513 ORTHO05D008148 3.2e-16 88.6 60 70.0
vmacro07203 Vaccinium macrocarpon HOM05D007513 ORTHO05D008148 3.2e-16 88.6 85 57.6
Aqoxy7G03437 Aquilegia oxysepala HOM05D007513 ORTHO05D008148 4.1e-16 88.2 68 64.7
Ca_18552_v3 Cicer arietinum L. HOM05D007513 ORTHO05D008148 4.1e-16 88.2 73 60.3
Psat6g024240 Pisum sativum HOM05D007513 ORTHO05D008148 9.2e-16 87.0 65 64.6
arahy.Tifrunner.gnm1.ann1.LDCV9W Arachis hypogaea HOM05D007513 ORTHO05D008148 1.2e-15 86.7 64 64.1
Nitab4.5_0001417g0120 Nicotiana tabacum HOM05D007513 ORTHO05D008148 1.2e-15 86.7 58 72.4
arahy.Tifrunner.gnm1.ann1.8F1CK2 Arachis hypogaea HOM05D007513 ORTHO05D008148 1.6e-15 86.3 65 63.1
DCAR_017173 Daucus carota HOM05D007513 ORTHO05D008148 1.6e-15 86.3 104 49.0
Prupe.6G222400 Prunus persica HOM05D007513 ORTHO05D008148 2.1e-15 85.9 57 77.2
arahy.Tifrunner.gnm1.ann1.P2RW0X Arachis hypogaea HOM05D007513 ORTHO05D008148 2.7e-15 85.5 62 66.1
arahy.Tifrunner.gnm1.ann1.QIRY5C Arachis hypogaea HOM05D007513 ORTHO05D008148 2.7e-15 85.5 62 66.1
MELO3C030975.2 Cucumis melo HOM05D007513 ORTHO05D008148 3.5e-15 85.1 62 72.6
Psat6g076840 Pisum sativum HOM05D007513 ORTHO05D008148 4.6e-15 84.7 56 69.6
PGR102G1378 Punica granatum HOM05D007513 ORTHO05D008148 4.6e-15 84.7 70 58.6
HPP92_010626 Vanilla planifolia HOM05D007513 ORTHO05D008148 6.0e-15 84.3 59 71.2
HPP92_010652 Vanilla planifolia HOM05D007513 ORTHO05D008148 6.0e-15 84.3 59 71.2
DCAR_013160 Daucus carota HOM05D007513 ORTHO05D008148 1.7e-14 82.8 64 65.6
Glyma.06G321800 Glycine max HOM05D007513 ORTHO05D008148 1.7e-14 82.8 96 51.0
Os03g0205150 Oryza sativa ssp. japonica HOM05D007513 ORTHO05D008148 1.7e-14 82.8 62 61.3
Phvul.005G004100 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 2.3e-14 82.4 83 53.0
VMungo1080G1633 Vigna mungo HOM05D007513 ORTHO05D008148 3.0e-14 82.0 64 62.5
Cpa.g.sc6.31 Carica papaya HOM05D007513 ORTHO05D008148 6.6e-14 80.9 67 65.7
Thhalv10027185m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 8.6e-14 80.5 77 55.8
Ah.14g088990 Amaranthus hybridus HOM05D007513 ORTHO05D008148 1.9e-13 79.3 59 64.4
BcaNung02934 Brassica carinata HOM05D014277 ORTHO05D008148 1.9e-13 79.3 77 54.5
Aa31LG6G14500 Aethionema arabicum HOM05D007513 ORTHO05D008148 4.3e-13 78.2 62 62.9
Solyc03g044080.4 Solanum lycopersicum HOM05D007513 ORTHO05D008148 4.3e-13 78.2 63 60.3
THA.LOC104807627 Tarenaya hassleriana HOM05D007513 ORTHO05D008148 7.3e-13 77.4 71 57.7
PGSC0003DMG400014868 Solanum tuberosum HOM05D007513 ORTHO05D008148 1.2e-12 76.6 80 53.8
EL10Ac8g20627 Beta vulgaris HOM05D007513 ORTHO05D008148 2.8e-12 75.5 58 62.1
Lalb_Chr08g0235081 Lupinus albus HOM05D007513 ORTHO05D008148 2.8e-12 75.5 58 60.3
A08p22690 Brassica napus HOM05D007513 ORTHO05D008148 3.6e-12 75.1 104 44.2
BraA08t34236Z Brassica rapa HOM05D007513 ORTHO05D008148 3.6e-12 75.1 104 44.2
Glyma.04G112900 Glycine max HOM05D007513 ORTHO05D008148 3.6e-12 75.1 64 59.4
C07p62480 Brassica napus HOM05D014277 ORTHO05D008148 4.7e-12 74.7 77 53.2
Lalb_Chr24g0403261 Lupinus albus HOM05D007513 ORTHO05D008148 1.1e-11 73.6 58 58.6
BcaC01g00397 Brassica carinata HOM05D007513 ORTHO05D008148 1.4e-11 73.2 104 42.3
BolC3t20170H Brassica oleracea HOM05D007513 ORTHO05D008148 1.4e-11 73.2 104 42.3
Gohir.A02G152300 Gossypium hirsutum HOM05D045493 ORTHO05D008148 1.8e-11 72.8 134 38.8
BcaB03g12338 Brassica carinata HOM05D007513 ORTHO05D008148 3.1e-11 72.0 75 50.7
C03p79260 Brassica napus HOM05D007513 ORTHO05D008148 3.1e-11 72.0 104 41.3
Carub.0004s0224 Capsella rubella HOM05D007513 ORTHO05D008148 3.1e-11 72.0 71 53.5
BcaNung02064 Brassica carinata HOM05D014277 ORTHO05D008148 5.2e-11 71.2 77 50.6
COL.COLO4_11560 Corchorus olitorius HOM05D007513 ORTHO05D008148 1.2e-10 70.1 66 56.1
arahy.Tifrunner.gnm1.ann1.QIF42D Arachis hypogaea HOM05D007513 ORTHO05D008148 2.6e-10 68.9 51 66.7
TPR.G16351 Trifolium pratense HOM05D007513 ORTHO05D008148 2.6e-10 68.9 124 37.1
Peaxi162Scf00118g02024 Petunia axillaris HOM05D007513 ORTHO05D008148 4.4e-10 68.2 79 48.1
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 9.9e-10 67.0 46 71.7
Thhalv10000379m.g Eutrema salsugineum HOM05D007513 ORTHO05D008148 9.9e-10 67.0 70 47.1
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 2.2e-09 65.9 49 63.3
Lj6g0007185 Lotus japonicus HOM05D007513 ORTHO05D008148 3.8e-09 65.1 85 43.5
RcHm_v2.0_Chr5g0053551 Rosa chinensis HOM05D015974 ORTHO05D008148 4.9e-09 64.7 57 59.6
RcHm_v2.0_Chr5g0053611 Rosa chinensis HOM05D015974 ORTHO05D008148 4.9e-09 64.7 57 59.6
arahy.Tifrunner.gnm1.ann1.X3Z0KH Arachis hypogaea HOM05D003009 ORTHO05D008148 6.4e-09 64.3 53 60.4
FvH4_1g17450 Fragaria vesca HOM05D015974 ORTHO05D008148 8.4e-09 63.9 106 44.3
FAN19G1675 Fragaria x ananassa HOM05D015974 ORTHO05D008148 8.4e-09 63.9 106 44.3
FAN23G1252 Fragaria x ananassa HOM05D015974 ORTHO05D008148 8.4e-09 63.9 106 44.3
FAN28G2668 Fragaria x ananassa HOM05D015974 ORTHO05D008148 8.4e-09 63.9 106 44.3
PSO170G3772 Papaver somniferum HOM05D007513 ORTHO05D008148 8.4e-09 63.9 76 47.4
arahy.Tifrunner.gnm1.ann1.N7EVBW Arachis hypogaea HOM05D007513 ORTHO05D008148 1.1e-08 63.5 44 70.5
SEGI_38697 Sequoiadendron giganteum HOM05D007513 ORTHO05D008148 2.4e-08 62.4 52 55.8
Sopen03g007910 Solanum pennellii HOM05D007513 ORTHO05D008148 2.4e-08 62.4 52 59.6
Lj6g0018022 Lotus japonicus HOM05D007513 ORTHO05D008148 3.2e-08 62.0 55 54.5
Phvul.010G166000 Phaseolus vulgaris HOM05D007513 ORTHO05D008148 9.2e-08 60.5 38 68.4
arahy.Tifrunner.gnm1.ann1.NLBN4J Arachis hypogaea HOM05D007513 ORTHO05D008148 2.1e-07 59.3 50 60.0
CARHR245990 Cardamine hirsuta HOM05D014277 ORTHO05D008148 1.0e-06 57.0 71 46.5
BolC7t46662H Brassica oleracea HOM05D014277 ORTHO05D008148 2.3e-06 55.8 66 51.5
A03p65340 Brassica napus HOM05D014277 ORTHO05D008148 8.6e-06 53.9 51 58.8
BraA03t15588Z Brassica rapa HOM05D014277 ORTHO05D008148 8.6e-06 53.9 51 58.8


User provided reference genes

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