Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 2416.0 1253 100.0
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1580.8 1260 67.5
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1552.7 1266 64.8
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1547.7 1266 64.6
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1540.0 1263 64.4
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1524.6 1260 64.1
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1492.6 1258 63.3
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1487.2 1255 62.3
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1485.7 1255 62.0
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1483.8 1255 62.2
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1480.3 1259 62.1
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1475.7 1257 62.5
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1457.2 1263 62.2
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1432.9 1263 61.4
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1420.2 1259 60.0
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1417.9 1265 60.2
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1416.7 1259 60.4
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1412.9 1269 60.4
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1402.9 1256 60.1
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1397.1 1256 60.0
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1396.3 1266 59.6
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1389.8 1257 59.7
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1383.2 1261 60.1
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1347.8 1283 57.4
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1342.4 1272 57.6
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1340.9 1265 57.5
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1337.8 1102 63.9
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1327.4 1244 60.0
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1325.1 1263 55.9
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1323.1 1274 55.8
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1319.7 1270 56.6
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1314.7 1260 55.9
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1312.4 1261 55.8
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1310.8 1264 57.0
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1308.9 1276 56.0
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1305.8 1254 56.1
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1304.3 1266 55.9
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1295.4 1184 59.4
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1293.5 1258 54.8
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1278.8 1259 54.9
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1277.3 1262 55.0
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1275.8 1259 55.2
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1267.3 1247 55.7
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1266.1 1268 54.4
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1265.4 1262 54.5
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1261.9 1270 55.3
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1261.1 1280 53.8
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1258.4 1245 54.8
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1251.1 1261 53.4
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1246.1 1260 53.7
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1239.9 1260 53.7
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1237.6 1257 54.0
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1237.2 1015 64.9
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1234.9 1257 53.3
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1234.6 1247 54.3
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1232.2 1260 53.6
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1231.5 1244 53.6
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1230.7 1259 53.9
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1219.5 1252 53.0
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1211.8 1259 52.2
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1205.7 1260 53.2
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1198.7 1267 52.8
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1196.4 1263 52.9
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1194.9 1262 52.5
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1194.1 1278 52.0
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1188.7 1200 55.8
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1186.0 1264 53.1
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1186.0 1253 51.7
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1179.1 1259 51.9
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1172.9 1271 52.7
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1167.5 1248 51.9
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1166.4 1183 55.6
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1164.8 1259 51.2
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1162.1 941 64.8
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1156.7 1270 51.9
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1155.6 1244 51.5
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1155.2 1264 51.7
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1152.5 1265 51.5
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1150.2 1256 52.5
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1137.1 1263 50.8
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1136.3 1239 52.5
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1123.6 1310 49.3
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1112.8 1244 51.2
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1105.5 935 63.5
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1104.7 1261 49.4
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1100.9 1267 50.1
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1097.8 1271 49.6
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.9e-310 1068.9 868 65.7
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 6.9e-304 1047.7 1050 53.0
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 5.0e-302 1041.6 1254 47.5
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.4e-301 1040.0 1213 49.0
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 2.2e-273 946.4 978 52.7
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 1.1e-251 874.4 849 56.2
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 4.6e-247 859.0 1041 49.2
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 2.4e-240 836.6 1246 42.8
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 8.4e-233 811.6 1248 39.6
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 1.7e-230 803.9 977 47.9
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 3.6e-220 769.6 907 48.1
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 9.9e-218 761.5 1289 37.7
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 8.5e-185 652.1 912 42.1
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 7.4e-181 639.0 886 42.1
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.1e-171 606.7 569 56.1
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.6e-165 587.4 801 43.1
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 1.7e-164 584.7 1157 34.8
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 2.0e-154 551.2 805 41.2
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 7.3e-144 516.2 427 65.8
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 4.7e-143 513.5 636 44.5
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 5.6e-128 463.4 458 55.0
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.1e-122 444.9 600 42.5
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 5.8e-117 426.8 353 66.9
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 6.4e-116 423.3 342 68.1
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 2.1e-114 418.3 342 67.8
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 8.7e-105 386.3 363 58.7
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 6.9e-102 376.7 384 53.9
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 3.4e-93 347.8 236 73.3
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.3e-92 345.9 660 34.2
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 5.7e-80 303.9 456 36.6
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 2.4e-78 298.5 397 43.3
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 2.0e-69 268.9 376 44.9
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 4.5e-69 267.7 486 34.2
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-59 234.6 340 34.1
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 7.7e-53 213.8 295 44.4
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 5.0e-52 211.1 293 41.3
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.7e-39 169.5 169 50.3
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.8e-34 152.1 314 36.3
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 1.5e-27 129.8 122 54.1
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.2e-23 115.9 123 47.2
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 8.3e-23 114.0 123 48.0
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 4.1e-22 111.7 123 48.0
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 5.4e-22 111.3 115 47.8
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 1.0e-20 107.1 203 36.9
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 3.3e-19 102.1 404 26.0
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 1.2e-10 73.6 61 55.7
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 3.6e-10 72.0 142 29.6


User provided reference genes

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