Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G109200 Manihot esculenta HOM05D005317 ORTHO05D005146 8.5e-93 343.6 165 100.0
Potri.007G007000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.2e-43 180.3 167 59.9
Sabra07G0005300 Salix brachista HOM05D005317 ORTHO05D005146 3.8e-40 168.7 165 58.8
Atru.chr3.1057 Acer truncatum HOM05D005317 ORTHO05D005146 3.2e-39 165.6 174 52.9
Thecc.01G076000 Theobroma cacao HOM05D005317 ORTHO05D005146 7.3e-36 154.5 165 50.9
Ciclev10026641m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.6e-35 152.1 169 49.7
CiPaw.01G002200 Carya illinoinensis HOM05D005317 ORTHO05D005146 3.8e-32 142.1 169 50.9
QL06p038960 Quercus lobata HOM05D005317 ORTHO05D005146 4.9e-32 141.7 163 49.7
Duzib187G1956 Durio zibethinus HOM05D005317 ORTHO05D005146 5.4e-31 138.3 174 43.7
Lj4g0026806 Lotus japonicus HOM05D005317 ORTHO05D005146 1.2e-30 137.1 168 47.0
COL.COLO4_11612 Corchorus olitorius HOM05D005317 ORTHO05D005146 3.5e-30 135.6 166 45.2
Medtr4g097480 Medicago truncatula HOM05D005317 ORTHO05D005146 1.1e-28 130.6 166 48.8
Prupe.6G217200 Prunus persica HOM05D005317 ORTHO05D005146 2.5e-28 129.4 171 49.1
Psat0ss26165g0240 Pisum sativum HOM05D005317 ORTHO05D005146 3.3e-28 129.0 169 47.9
CSS0048752 Camellia sinensis var. sinensis HOM05D005317 ORTHO05D005146 7.3e-28 127.9 167 49.7
TAR376G0587 Trochodendron aralioides HOM05D005317 ORTHO05D005146 1.3e-27 127.1 158 48.1
Gohir.A02G149800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-27 126.7 162 44.4
TPR.G3735 Trifolium pratense HOM05D005317 ORTHO05D005146 1.6e-27 126.7 168 45.8
Gohir.D12G076800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.1e-27 126.3 163 42.9
Gorai.008G085600 Gossypium raimondii HOM05D005317 ORTHO05D005146 2.1e-27 126.3 163 42.9
Phvul.003G233000 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.8e-27 125.9 165 46.7
FvH4_1g18210 Fragaria vesca HOM05D005317 ORTHO05D005146 3.6e-27 125.6 182 41.8
FAN19G1325 Fragaria x ananassa HOM05D005317 ORTHO05D005146 8.1e-27 124.4 182 41.2
Gohir.A12G080100 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.4e-26 123.6 163 42.3
Haze_15027 Corylus avellana HOM05D005317 ORTHO05D005146 6.9e-26 121.3 161 44.7
RcHm_v2.0_Chr2g0108721 Rosa chinensis HOM05D005317 ORTHO05D005146 9.0e-26 120.9 182 42.9
VMungo0251G0145 Vigna mungo HOM05D005317 ORTHO05D005146 9.0e-26 120.9 164 43.9
Cfa004386 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.5e-25 120.2 169 42.6
Hma1.2p1_1139F.1_g260880 Hydrangea macrophylla HOM05D005317 ORTHO05D005146 2.0e-25 119.8 161 45.3
Gohir.D03G030600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 2.6e-25 119.4 167 41.3
Glyma.05G108400 Glycine max HOM05D005317 ORTHO05D005146 7.6e-25 117.9 159 47.2
TAR381G0867 Trochodendron aralioides HOM05D005317 ORTHO05D005146 7.6e-25 117.9 154 48.1
TAR628G1097 Trochodendron aralioides HOM05D005317 ORTHO05D005146 9.9e-25 117.5 162 42.0
FAN28G2997 Fragaria x ananassa HOM05D005317 ORTHO05D005146 2.9e-24 115.9 183 41.5
Oeu021452.1 Olea europaea HOM05D005317 ORTHO05D005146 2.9e-24 115.9 172 42.4
Gorai.003G032200 Gossypium raimondii HOM05D005317 ORTHO05D005146 3.8e-24 115.5 167 40.7
FAN23G2069 Fragaria x ananassa HOM05D005317 ORTHO05D005146 6.4e-24 114.8 183 41.5
SGA_v2.0_scaffold15G07499 Striga asiatica HOM05D005317 ORTHO05D005146 6.4e-24 114.8 161 46.0
COL.COLO4_28461 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.1e-23 114.0 159 44.0
FAN26G0581 Fragaria x ananassa HOM05D005317 ORTHO05D005146 1.9e-23 113.2 183 41.5
Lalb_Chr09g0335521 Lupinus albus HOM05D005317 ORTHO05D005146 1.9e-23 113.2 167 41.3
Eucgr.H02331 Eucalyptus grandis HOM05D005317 ORTHO05D005146 2.4e-23 112.8 165 43.0
Dinv23042 Davidia involucrata HOM05D005317 ORTHO05D005146 1.2e-22 110.5 146 46.6
Manes.05G183500 Manihot esculenta HOM05D005317 ORTHO05D005146 6.0e-22 108.2 165 44.8
Actinidia16411 Actinidia chinensis HOM05D005317 ORTHO05D005146 3.0e-21 105.9 153 43.1
Glyma.17G158600 Glycine max HOM05D005317 ORTHO05D005146 1.1e-20 104.0 159 43.4
Oeu053645.1 Olea europaea HOM05D005317 ORTHO05D005146 3.3e-20 102.4 158 40.5
MSTRG.23654 Avicennia marina HOM05D005317 ORTHO05D005146 4.3e-20 102.1 163 39.9
Gohir.A11G212400 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.6e-20 101.7 162 37.0
Aqoxy6G02455 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.3e-19 100.5 157 42.0
Dinv26957 Davidia involucrata HOM05D005317 ORTHO05D005146 1.3e-19 100.5 128 51.6
GSVIVG01009301001 Vitis vinifera HOM05D005317 ORTHO05D005146 2.1e-19 99.8 159 40.9
Oeu047228.1 Olea europaea HOM05D005317 ORTHO05D005146 8.1e-19 97.8 164 39.6
Cc10_g07630 Coffea canephora HOM05D005317 ORTHO05D005146 1.1e-18 97.4 156 37.8
Nn5g30662 Nelumbo nucifera HOM05D005317 ORTHO05D005146 1.8e-18 96.7 149 40.3
Thecc.08G084700 Theobroma cacao HOM05D005317 ORTHO05D005146 4.0e-18 95.5 155 40.6
SalBow3G0220 Salvia bowleyana HOM05D005317 ORTHO05D005146 6.9e-18 94.7 161 40.4
Oeu014288.1 Olea europaea HOM05D005317 ORTHO05D005146 9.0e-18 94.4 150 38.0
Rhsim07G0217500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.5e-17 93.6 156 41.7
Phvul.001G030800 Phaseolus vulgaris HOM05D005317 ORTHO05D005146 2.0e-17 93.2 158 38.0
SalBow4G3082 Salvia bowleyana HOM05D005317 ORTHO05D005146 2.6e-17 92.8 156 40.4
TPR.G13020 Trifolium pratense HOM05D005317 ORTHO05D005146 3.4e-17 92.4 153 39.9
VMungo0647G1960 Vigna mungo HOM05D005317 ORTHO05D005146 4.5e-17 92.0 157 38.9
Gorai.007G226200 Gossypium raimondii HOM05D005317 ORTHO05D005146 9.9e-17 90.9 158 38.0
Eucgr.F00095 Eucalyptus grandis HOM05D005317 ORTHO05D005146 3.8e-16 89.0 152 36.2
Sabra14G0007800 Salix brachista HOM05D005317 ORTHO05D005146 4.9e-16 88.6 157 41.4
Medtr1g017500 Medicago truncatula HOM05D005317 ORTHO05D005146 8.4e-16 87.8 146 35.6
Gorai.010G027300 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.9e-15 86.7 149 41.6
Potri.014G013000 Populus trichocarpa HOM05D005317 ORTHO05D005146 1.9e-15 86.7 162 42.0
Sed0021979 Sechium edule HOM05D005317 ORTHO05D005146 1.9e-15 86.7 158 39.9
ClCG01G017790 Citrullus lanatus HOM05D005317 ORTHO05D005146 2.4e-15 86.3 154 41.6
Sopen04g031150 Solanum pennellii HOM05D005317 ORTHO05D005146 2.4e-15 86.3 147 40.1
Thecc.08G084600 Theobroma cacao HOM05D005317 ORTHO05D005146 3.2e-15 85.9 152 35.5
Glyma.17G232900 Glycine max HOM05D005317 ORTHO05D005146 5.5e-15 85.1 156 39.7
Gohir.D06G022700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 5.5e-15 85.1 155 41.3
Psat6g017280 Pisum sativum HOM05D005317 ORTHO05D005146 5.5e-15 85.1 146 39.0
Actinidia11964 Actinidia chinensis HOM05D031334 ORTHO05D026410 7.1e-15 84.7 140 42.1
Glyma.14G089084 Glycine max HOM05D005317 ORTHO05D005146 7.1e-15 84.7 148 37.2
Gohir.A01G123600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 9.3e-15 84.3 152 32.2
Lj5g0002019 Lotus japonicus HOM05D005317 ORTHO05D005146 9.3e-15 84.3 149 40.3
COL.COLO4_28460 Corchorus olitorius HOM05D005317 ORTHO05D005146 1.2e-14 84.0 155 32.9
Rhsim08G0090500 Rhododendron simsii HOM05D005317 ORTHO05D005146 1.6e-14 83.6 165 36.4
CDE07G0499 Ceratophyllum demersum HOM05D000271 ORTHO05D009467 2.1e-14 83.2 158 36.7
Ciclev10027255m.g Citrus clementina HOM05D005317 ORTHO05D005146 3.5e-14 82.4 161 36.0
CiPaw.08G052300 Carya illinoinensis HOM05D005317 ORTHO05D005146 4.6e-14 82.0 155 38.7
Migut.H00325 Erythranthe guttata HOM05D005317 ORTHO05D005146 4.6e-14 82.0 172 33.1
Gohir.A06G025600 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.0e-14 81.6 150 41.3
Actinidia29632 Actinidia chinensis HOM05D005317 ORTHO05D005146 7.9e-14 81.3 111 44.1
Lalb_Chr24g0399511 Lupinus albus HOM05D005317 ORTHO05D005146 7.9e-14 81.3 146 37.0
DCAR_020064 Daucus carota HOM05D005317 ORTHO05D005146 1.0e-13 80.9 159 34.0
Gorai.002G136200 Gossypium raimondii HOM05D005317 ORTHO05D005146 1.8e-13 80.1 152 31.6
Sc24g0002340 Simmondsia chinensis HOM05D005317 ORTHO05D005146 1.8e-13 80.1 142 35.9
CiPaw.07G172100 Carya illinoinensis HOM05D005317 ORTHO05D005146 6.7e-13 78.2 157 36.3
Gohir.D01G111432 Gossypium hirsutum HOM05D005317 ORTHO05D005146 6.7e-13 78.2 152 32.2
Cpa.g.c31093.6 Carica papaya HOM05D005317 ORTHO05D005146 1.1e-12 77.4 163 33.7
Gohir.D05G215300 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.1e-12 77.4 155 35.5
Sc03g0002520 Simmondsia chinensis HOM05D005317 ORTHO05D005146 1.1e-12 77.4 95 43.2
Cfa013739 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.5e-12 77.0 172 33.1
Migut.C00473 Erythranthe guttata HOM05D005317 ORTHO05D005146 1.9e-12 76.6 155 34.2
Haze_22391 Corylus avellana HOM05D005317 ORTHO05D005146 2.5e-12 76.3 181 32.0
Glyma.06G048700 Glycine max HOM05D005317 ORTHO05D005146 3.3e-12 75.9 159 34.6
Gohir.A05G212000 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.6e-11 73.6 156 34.6
Atru.chr13.870 Acer truncatum HOM05D005317 ORTHO05D005146 2.1e-11 73.2 159 34.0
Ah.02g129000 Amaranthus hybridus HOM05D005317 ORTHO05D005146 2.8e-11 72.8 115 43.5
Prupe.1G419300 Prunus persica HOM05D005317 ORTHO05D005146 2.8e-11 72.8 152 37.5
Gorai.009G222000 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.2e-11 71.6 148 33.8
MBI16_g41241_MAGBIO Magnolia biondii HOM05D005317 ORTHO05D005146 6.2e-11 71.6 151 38.4
EL10Ac6g13373 Beta vulgaris HOM05D005317 ORTHO05D005146 8.1e-11 71.2 103 41.7
Lj4C75G10 Lonicera japonica HOM05D002048 ORTHO05D002146 1.1e-10 70.9 134 34.3
Aqoxy6G02509 Aquilegia oxysepala HOM05D005317 ORTHO05D005146 1.8e-10 70.1 90 44.4
PGSC0003DMG400021404 Solanum tuberosum HOM05D061607 ORTHO05D005146 1.8e-10 70.1 164 34.8
Actinidia10221 Actinidia chinensis HOM05D005317 ORTHO05D005146 4.0e-10 68.9 107 38.3
Manes.05G183600 Manihot esculenta HOM05D005317 ORTHO05D005146 9.0e-10 67.8 161 31.1
VMungo1309G2313 Vigna mungo HOM05D005317 ORTHO05D005146 9.0e-10 67.8 152 31.6
CsaV3_6G044310 Cucumis sativus L. HOM05D005317 ORTHO05D005146 1.2e-09 67.4 155 38.1
MSTRG.25022 Avicennia marina HOM05D005317 ORTHO05D005146 3.4e-09 65.9 153 34.0
Sed0025721 Sechium edule HOM05D005317 ORTHO05D005146 3.4e-09 65.9 151 37.1
DCAR_009867 Daucus carota HOM05D005317 ORTHO05D005146 4.5e-09 65.5 168 31.5
Gohir.A06G025700 Gossypium hirsutum HOM05D005317 ORTHO05D005146 4.5e-09 65.5 156 32.7
CiPaw.07G172000 Carya illinoinensis HOM05D005317 ORTHO05D005146 7.6e-09 64.7 147 33.3
Gorai.010G027400 Gossypium raimondii HOM05D005317 ORTHO05D005146 7.6e-09 64.7 158 32.9
PGSC0003DMG400004968 Solanum tuberosum HOM05D005317 ORTHO05D005146 1.3e-08 63.9 155 33.5
Gohir.D06G022800 Gossypium hirsutum HOM05D005317 ORTHO05D005146 1.7e-08 63.5 158 32.9
Ciclev10029376m.g Citrus clementina HOM05D005317 ORTHO05D005146 2.2e-08 63.2 179 29.6
Haze_22390 Corylus avellana HOM05D000071 ORTHO05D000029 2.2e-08 63.2 153 34.6
CDE04G2604 Ceratophyllum demersum HOM05D000375 ORTHO05D000240 2.9e-08 62.8 158 32.9
ECA246G5098 Erigeron canadensis HOM05D005317 ORTHO05D005146 4.9e-08 62.0 152 38.8
Gorai.002G136100 Gossypium raimondii HOM05D005317 ORTHO05D005146 6.5e-08 61.6 146 33.6
FAN27G2237 Fragaria x ananassa HOM05D030376 ORTHO05D005146 8.4e-08 61.2 174 29.9
SGA_v2.0_scaffold238G43910 Striga asiatica HOM05D005317 ORTHO05D005146 8.4e-08 61.2 164 30.5
ATR0739G163 Amborella trichopoda HOM05D005317 ORTHO05D005146 1.1e-07 60.8 170 33.5
Cfa013738 Carpinus fangiana HOM05D005317 ORTHO05D005146 1.4e-07 60.5 158 32.9
FAN20G0770 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.5e-07 59.7 176 30.1
Sopen02g036650 Solanum pennellii HOM05D061607 ORTHO05D005146 2.5e-07 59.7 106 35.8
Atru.chr13.869 Acer truncatum HOM05D011270 ORTHO05D012905 4.2e-07 58.9 170 33.5
FAN15G0380 Fragaria x ananassa HOM05D030376 ORTHO05D005146 5.5e-07 58.5 191 27.2
Gohir.A01G123550 Gossypium hirsutum HOM05D005317 ORTHO05D005146 7.1e-07 58.2 146 32.9
AUR62037856 Chenopodium quinoa HOM05D051035 ORTHO05D005146 1.6e-06 57.0 108 35.2
Lsat_1_v5_gn_4_159841 Lactuca sativa HOM05D005317 ORTHO05D005146 1.6e-06 57.0 170 31.2
FAN24G2816 Fragaria x ananassa HOM05D030376 ORTHO05D005146 2.7e-06 56.2 128 32.8


User provided reference genes

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