Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 4.7e-146 521.2 260 100.0
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 7.3e-99 364.4 261 71.6
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.8e-98 361.7 246 73.2
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 3.1e-97 359.0 248 72.6
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 4.0e-97 358.6 256 70.7
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 5.8e-96 354.8 257 68.9
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 3.8e-95 352.1 259 68.3
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 4.9e-95 351.7 245 71.0
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.4e-94 349.4 259 69.1
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 9.3e-94 347.4 264 69.7
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 9.3e-94 347.4 254 68.5
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 1.2e-93 347.1 261 67.8
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 1.2e-93 347.1 263 69.2
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 1.6e-93 346.7 254 68.1
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 1.6e-93 346.7 255 69.4
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-93 346.7 239 71.5
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 3.5e-93 345.5 222 75.2
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 4.6e-93 345.1 229 73.8
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 7.9e-93 344.4 248 72.2
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 1.8e-92 343.2 221 77.8
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 1.8e-92 343.2 229 73.4
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 5.1e-92 341.7 216 76.9
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 5.1e-92 341.7 245 70.6
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 6.7e-92 341.3 258 66.7
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 8.7e-92 340.9 265 67.5
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.5e-91 340.1 194 79.4
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 1.9e-91 339.7 255 65.5
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 1.9e-91 339.7 251 69.7
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 1.9e-91 339.7 239 71.1
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 3.3e-91 339.0 250 70.4
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 4.3e-91 338.6 257 66.9
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 4.3e-91 338.6 242 70.7
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 7.4e-91 337.8 262 64.9
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 7.4e-91 337.8 250 67.2
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 9.6e-91 337.4 259 69.1
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 1.3e-90 337.0 255 70.2
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.6e-90 336.7 257 66.9
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.6e-90 336.7 244 69.3
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 2.1e-90 336.3 258 66.7
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 3.7e-90 335.5 257 67.7
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 4.8e-90 335.1 260 68.5
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 6.2e-90 334.7 252 68.3
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 6.2e-90 334.7 246 69.9
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 8.1e-90 334.3 234 71.8
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 1.8e-89 333.2 249 68.7
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.4e-89 332.8 240 69.2
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.4e-89 332.8 240 69.6
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.4e-89 332.8 251 66.9
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 2.4e-89 332.8 220 70.5
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.1e-89 332.4 240 69.2
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.0e-89 332.0 263 66.9
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 4.0e-89 332.0 260 66.2
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 5.3e-89 331.6 258 68.2
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 6.9e-89 331.3 254 66.5
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 3.4e-88 328.9 258 67.4
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 4.5e-88 328.6 236 68.2
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 5.8e-88 328.2 256 64.1
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 7.6e-88 327.8 257 67.7
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 7.6e-88 327.8 257 65.4
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.6e-88 327.8 257 65.4
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.3e-87 327.0 252 63.1
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.9e-87 325.9 250 66.8
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 1.4e-86 323.6 257 63.4
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 1.9e-86 323.2 202 75.2
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 3.2e-86 322.4 245 66.5
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 5.5e-86 321.6 183 78.7
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 7.1e-86 321.2 241 65.6
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 7.1e-86 321.2 237 66.2
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 1.2e-85 320.5 223 69.1
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.6e-85 320.1 200 75.0
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 1.6e-85 320.1 222 69.8
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.1e-85 319.7 245 64.9
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 2.1e-85 319.7 198 75.8
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 6.0e-85 318.2 250 64.4
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 7.9e-85 317.8 186 78.0
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 1.3e-84 317.0 190 77.4
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 2.3e-84 316.2 237 65.4
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 2.3e-84 316.2 200 74.5
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 3.9e-84 315.5 198 74.7
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 6.7e-84 314.7 196 74.5
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 8.7e-84 314.3 237 65.0
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 1.1e-83 313.9 193 76.7
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 1.5e-83 313.5 240 66.2
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.9e-83 313.2 238 65.5
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.9e-83 313.2 254 63.4
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 3.3e-83 312.4 210 70.0
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 3.3e-83 312.4 242 65.3
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 4.3e-83 312.0 244 63.5
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 4.3e-83 312.0 244 63.5
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 5.6e-83 311.6 256 63.3
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 9.6e-83 310.8 232 65.1
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 1.6e-82 310.1 232 65.1
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 3.7e-82 308.9 230 67.0
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 3.7e-82 308.9 187 74.3
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 3.7e-82 308.9 219 68.9
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 4.8e-82 308.5 201 74.1
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 5.3e-81 305.1 198 73.7
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 6.9e-81 304.7 236 64.0
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 2.6e-80 302.8 238 63.9
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 7.6e-80 301.2 182 76.4
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 1.3e-79 300.4 201 72.1
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 1.3e-79 300.4 240 62.9
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.7e-79 300.1 235 66.4
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 8.4e-79 297.7 185 76.2
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 7.1e-78 294.7 161 82.6
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.6e-77 293.5 155 87.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.7e-77 292.7 240 64.6
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.3e-76 289.7 221 65.6
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 4.3e-75 285.4 162 80.2
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 4.3e-75 285.4 191 70.7
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 4.8e-74 282.0 257 59.1
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 1.4e-73 280.4 243 59.7
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 1.8e-73 280.0 198 70.2
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 4.5e-72 275.4 156 79.5
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 5.0e-71 271.9 221 64.7
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 3.6e-69 265.8 252 57.1
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.3e-67 258.8 215 60.0
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 1.2e-64 250.8 253 53.4
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 7.9e-61 238.0 179 57.0
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 2.3e-60 236.5 246 55.7
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 3.7e-58 229.2 141 77.3
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 3.6e-53 212.6 203 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 1.7e-50 203.8 244 45.9
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 1.4e-49 200.7 127 71.7
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.8e-47 192.6 158 64.6
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 2.1e-45 186.8 98 85.7
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 8.8e-44 181.4 98 81.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 6.5e-39 165.2 103 68.9
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.9e-38 163.7 147 61.2
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.0e-31 141.4 91 73.6
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.8e-31 139.4 192 41.1
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.1e-30 137.9 94 70.2
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.6e-29 132.9 98 66.3
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 2.3e-23 113.6 170 37.6
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 1.5e-22 110.9 69 81.2
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 4.0e-20 102.8 101 61.4
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.2e-19 101.3 242 29.3
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 1.4e-17 94.4 179 33.0
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 9.2e-17 91.7 53 77.4
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 8.6e-15 85.1 132 37.9
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 1.5e-14 84.3 134 34.3
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.5e-14 84.3 54 74.1
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 5.6e-14 82.4 208 31.7
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.6e-13 79.7 112 44.6
GSVIVG01007445001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-11 74.7 101 45.5
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 4.4e-11 72.8 135 34.8
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 3.7e-10 69.7 52 59.6
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 1.2e-08 64.7 142 30.3
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 2.1e-08 63.9 37 78.4
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 2.7e-08 63.5 82 40.2
Oeu021813.1 Olea europaea HOM05D006847 ORTHO05D008685 5.0e-07 59.3 174 28.7
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.1e-06 58.2 99 32.3
Oeu013340.1 Olea europaea HOM05D004917 ORTHO05D005954 3.3e-06 56.6 98 41.8


User provided reference genes

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