Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 1.2e-189 666.8 452 100.0
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.8e-129 466.8 395 71.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.9e-95 353.2 389 59.4
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.7e-90 336.3 406 54.2
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.9e-86 323.9 389 55.5
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 2.9e-82 310.1 408 51.0
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 3.9e-79 299.7 408 50.2
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.5e-78 297.7 399 51.4
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.2e-77 294.7 393 50.1
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.2e-77 294.7 393 50.1
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.4e-76 291.2 344 55.5
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 3.1e-76 290.0 357 51.5
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.9e-76 288.5 412 48.5
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.2e-75 288.1 418 45.2
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 7.5e-75 285.4 398 50.5
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 3.2e-73 280.0 402 48.0
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.2e-73 278.5 378 49.2
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 2.1e-72 277.3 424 46.7
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 8.1e-69 265.4 442 46.4
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 3.4e-67 260.0 404 47.0
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 8.3e-66 255.4 401 47.9
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.2e-65 251.9 348 47.7
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 3.9e-63 246.5 408 45.1
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.9e-63 246.5 407 45.5
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 5.1e-63 246.1 398 42.2
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.9e-62 244.2 395 45.3
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 4.7e-61 239.6 342 46.2
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 8.1e-61 238.8 355 51.8
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 6.8e-60 235.7 421 44.4
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.5e-59 234.6 430 42.3
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 4.4e-59 233.0 439 44.0
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 1.3e-58 231.5 424 43.6
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 1.3e-58 231.5 403 43.2
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 1.4e-57 228.0 370 42.2
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 3.2e-57 226.9 397 44.1
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 1.6e-56 224.6 424 42.7
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 2.1e-56 224.2 406 44.1
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.5e-56 223.4 366 44.8
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 4.6e-56 223.0 465 40.4
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.7e-55 221.1 365 42.7
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.7e-55 221.1 365 42.7
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.5e-54 218.0 403 43.4
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 1.9e-54 217.6 410 42.0
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.9e-54 217.6 422 42.2
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.3e-54 216.5 406 44.1
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 5.6e-54 216.1 412 41.0
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 7.3e-54 215.7 406 40.9
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.3e-53 214.9 377 42.4
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 3.6e-53 213.4 458 41.9
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 4.0e-52 209.9 482 39.2
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 1.2e-51 208.4 466 41.0
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 2.0e-51 207.6 411 42.8
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 8.4e-50 202.2 512 37.7
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 2.4e-49 200.7 473 35.3
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.4e-49 200.7 428 38.8
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 3.2e-49 200.3 414 44.0
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.4e-49 199.5 374 42.5
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 7.1e-49 199.1 472 35.0
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 7.1e-49 199.1 442 36.7
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 9.3e-49 198.7 360 43.6
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.6e-48 198.0 459 38.8
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 2.1e-48 197.6 471 38.0
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 6.0e-48 196.1 380 39.5
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 6.0e-48 196.1 380 39.5
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.8e-48 195.7 376 44.7
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.3e-47 194.9 490 37.6
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 1.3e-47 194.9 438 41.8
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 2.3e-47 194.1 488 37.3
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 2.3e-47 194.1 348 40.2
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 3.9e-47 193.4 392 42.1
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 5.1e-47 193.0 361 43.8
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 6.6e-47 192.6 427 37.5
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 4.3e-46 189.9 379 44.3
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 2.8e-45 187.2 499 33.1
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 3.6e-45 186.8 379 43.5
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 4.8e-45 186.4 397 37.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.8e-45 186.4 381 43.6
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 1.4e-44 184.9 438 35.8
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 4.0e-44 183.3 451 35.5
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 5.3e-44 183.0 379 41.7
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 6.9e-44 182.6 306 42.8
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 9.0e-44 182.2 448 39.1
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 9.0e-44 182.2 424 37.7
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.5e-43 181.4 266 45.5
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.0e-43 181.0 335 43.0
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.6e-43 180.6 270 45.2
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 4.5e-43 179.9 424 35.4
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.3e-42 178.3 400 39.0
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.7e-42 177.9 429 35.4
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 4.9e-42 176.4 445 34.4
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 4.9e-42 176.4 510 35.3
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 6.4e-42 176.0 407 41.8
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.4e-41 174.9 447 34.7
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 7.1e-41 172.6 356 39.0
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.2e-40 171.8 406 36.5
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.0e-40 169.5 437 34.3
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.3e-38 163.7 404 35.4
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 7.4e-38 162.5 458 33.0
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 2.8e-37 160.6 404 36.9
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 1.1e-36 158.7 382 40.6
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 1.1e-36 158.7 372 36.0
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 5.3e-36 156.4 348 37.9
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 2.6e-35 154.1 272 47.1
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 4.5e-35 153.3 528 32.6
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 4.5e-35 153.3 389 35.7
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 7.6e-35 152.5 341 35.8
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.8e-34 150.2 504 35.1
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 6.0e-32 142.9 381 31.8
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 7.9e-32 142.5 431 34.1
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.3e-31 141.7 195 45.1
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.3e-31 141.0 442 33.0
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 5.1e-31 139.8 373 31.9
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 3.3e-30 137.1 492 33.1
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 1.6e-29 134.8 190 53.7
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 8.2e-29 132.5 234 48.3
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.4e-28 131.7 192 46.9
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 2.4e-28 131.0 229 43.2
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 4.0e-28 130.2 371 32.6
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 5.3e-28 129.8 400 32.8
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 6.9e-28 129.4 434 32.3
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.2e-27 128.6 452 32.1
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 7.6e-27 125.9 459 32.0
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 7.6e-27 125.9 459 32.0
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 1.3e-26 125.2 450 31.8
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.8e-26 123.6 507 30.8
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.4e-25 121.7 453 31.3
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.4e-25 121.7 450 32.2
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 1.4e-25 121.7 270 35.6
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.5e-25 120.9 467 30.8
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 9.3e-25 119.0 339 36.0
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 1.8e-23 114.8 320 36.6
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.3e-23 114.4 318 33.0
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 3.0e-23 114.0 199 47.7
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.5e-22 110.9 376 30.9
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 3.3e-22 110.5 354 33.3
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 9.7e-22 109.0 384 32.0
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 4.8e-21 106.7 189 40.2
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.4e-20 105.1 458 29.3
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.4e-20 104.4 162 40.7
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 4.1e-20 103.6 169 44.4
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 6.9e-20 102.8 293 36.2
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.0e-18 96.7 297 32.3
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.2e-17 93.6 348 30.2
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 2.7e-16 90.9 252 31.3
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 4.6e-16 90.1 350 31.4
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 6.1e-16 89.7 161 40.4
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 8.8e-15 85.9 281 30.6
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.5e-14 85.1 252 35.3
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.3e-14 83.6 333 29.1
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 5.7e-14 83.2 229 32.8
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 2.2e-13 81.3 220 35.0
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 2.2e-13 81.3 362 30.1
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.7e-13 80.5 346 28.9
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 4.8e-13 80.1 180 35.0
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 8.2e-13 79.3 383 26.4
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 1.4e-12 78.6 81 56.8
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 4.1e-12 77.0 153 37.9
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.9e-10 70.9 372 32.3
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 3.8e-10 70.5 440 28.0
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 6.5e-10 69.7 136 41.9
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 1.1e-09 68.9 57 59.6
Potri.001G257300 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.4e-09 68.6 353 30.6
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 2.1e-08 64.7 359 28.4
SGA_v2.0_scaffold55G19776 Striga asiatica HOM05D003733 ORTHO05D004035 2.7e-08 64.3 152 31.6
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 3.6e-08 63.9 315 26.7
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 1.0e-07 62.4 138 34.1
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 8.8e-07 59.3 239 29.3
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.5e-06 58.5 455 28.6
CSS0014575 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 4.4e-06 57.0 83 43.4
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.7e-06 56.6 125 33.6
CSS0018014 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 7.4e-06 56.2 83 43.4


User provided reference genes

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