Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 3.8e-269 931.0 506 100.0
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 5.7e-164 581.6 510 64.7
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.5e-92 344.4 490 44.5
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 9.9e-92 341.7 490 43.5
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 9.9e-92 341.7 324 60.2
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.7e-91 340.9 325 59.7
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 7.9e-89 332.0 497 44.3
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 5.1e-88 329.3 490 45.9
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 2.5e-87 327.0 293 63.1
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 2.8e-86 323.6 535 42.1
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 8.1e-86 322.0 294 59.5
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.4e-85 321.2 483 46.0
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 1.8e-85 320.9 354 53.4
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 3.4e-84 316.6 324 58.3
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 7.6e-84 315.5 336 54.8
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.7e-83 314.3 531 41.6
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 2.9e-83 313.5 509 42.2
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 4.2e-82 309.7 509 44.4
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 5.5e-82 309.3 521 41.3
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.2e-81 308.1 302 57.9
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 1.8e-80 304.3 500 42.0
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 1.1e-79 301.6 478 42.9
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 3.3e-79 300.1 336 54.2
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 1.3e-78 298.1 311 55.0
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 1.3e-78 298.1 324 57.1
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.1e-78 297.4 339 53.1
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 8.1e-78 295.4 345 53.3
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.4e-77 293.9 310 56.8
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 2.4e-77 293.9 375 50.9
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 5.3e-77 292.7 340 53.2
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.2e-76 291.6 306 54.6
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.7e-75 287.7 351 52.1
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 3.8e-75 286.6 303 54.8
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 4.9e-75 286.2 347 48.4
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 4.9e-75 286.2 297 55.9
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 4.9e-75 286.2 297 55.9
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 8.4e-75 285.4 324 50.3
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 3.2e-74 283.5 287 54.7
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.7e-73 280.4 297 54.9
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.0e-72 278.5 289 55.0
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 1.8e-72 277.7 289 55.0
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 3.0e-72 276.9 281 54.4
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 5.1e-72 276.2 466 41.6
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 1.1e-69 268.5 305 49.8
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.3e-69 266.2 286 52.4
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.3e-69 266.2 286 52.4
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 7.6e-68 262.3 303 50.5
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 7.6e-68 262.3 410 40.7
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 1.7e-67 261.2 299 52.2
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 2.9e-67 260.4 466 42.1
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 3.8e-67 260.0 358 48.3
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 6.5e-67 259.2 290 54.8
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 1.1e-66 258.5 271 54.6
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 5.5e-66 256.1 295 49.2
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 2.7e-65 253.8 279 51.6
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 3.0e-64 250.4 287 50.9
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 5.1e-64 249.6 380 43.7
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 1.1e-63 248.4 315 47.3
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 1.1e-63 248.4 315 47.3
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 1.1e-63 248.4 489 40.1
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 1.5e-63 248.1 306 49.0
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 4.3e-63 246.5 299 46.2
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 5.7e-63 246.1 280 51.1
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 1.3e-62 245.0 294 52.7
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 1.6e-62 244.6 291 50.5
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 2.2e-62 244.2 298 48.3
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 2.2e-62 244.2 516 39.0
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 2.2e-62 244.2 280 51.1
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 4.1e-61 240.0 289 51.2
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 5.3e-61 239.6 339 45.7
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 2.6e-60 237.3 253 52.6
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 2.6e-60 237.3 274 50.0
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 5.9e-60 236.1 275 50.2
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 7.7e-60 235.7 349 44.7
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 3.8e-59 233.4 333 43.5
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 8.5e-59 232.3 293 46.1
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 1.4e-58 231.5 339 45.4
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 2.7e-57 227.3 283 48.8
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 6.1e-57 226.1 465 38.7
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 7.9e-57 225.7 298 48.0
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.0e-56 225.3 293 46.4
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 1.4e-56 224.9 297 45.8
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 1.8e-56 224.6 380 40.5
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 1.8e-56 224.6 308 44.5
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 2.3e-56 224.2 298 47.0
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 8.8e-56 222.2 296 47.0
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 8.8e-56 222.2 294 45.6
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 2.0e-55 221.1 275 49.5
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 1.7e-54 218.0 347 43.8
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 2.8e-54 217.2 343 41.7
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 6.3e-54 216.1 296 45.3
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 1.8e-53 214.5 472 36.7
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 4.1e-53 213.4 243 49.0
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 5.3e-53 213.0 290 46.2
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 6.9e-53 212.6 353 40.8
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 3.2e-50 203.8 267 48.3
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 2.7e-49 200.7 290 44.5
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 3.6e-49 200.3 274 46.0
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 6.1e-49 199.5 277 46.9
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 6.1e-49 199.5 255 47.8
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 2.3e-48 197.6 269 46.8
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 4.4e-47 193.4 294 44.6
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 4.4e-47 193.4 294 44.6
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 1.7e-46 191.4 277 45.5
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 2.2e-46 191.0 263 46.4
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 2.2e-46 191.0 263 46.4
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 5.3e-45 186.4 352 39.5
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 5.0e-43 179.9 212 50.5
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 1.1e-42 178.7 294 40.1
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 2.7e-41 174.1 294 40.5
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 6.1e-41 172.9 285 40.7
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 9.7e-39 165.6 231 44.6
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 1.7e-38 164.9 278 39.6
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 8.2e-38 162.5 270 41.1
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 3.1e-37 160.6 201 47.8
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 9.4e-34 149.1 253 43.5
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 9.4e-34 149.1 250 41.6
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.2e-31 142.1 162 46.9
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 1.4e-29 135.2 271 35.8
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 8.5e-27 125.9 246 36.2
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 7.5e-23 112.8 345 28.1
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 2.8e-22 110.9 284 31.7
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 5.9e-20 103.2 243 33.7
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 2.3e-16 91.3 268 29.9
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 2.3e-16 91.3 273 31.1
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 3.4e-15 87.4 264 27.3
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 5.7e-15 86.7 172 37.2
vmacro05480 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 1.5e-10 72.0 107 37.4
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 5.6e-10 70.1 79 46.8
TAR625G0743 Trochodendron aralioides HOM05D005322 ORTHO05D006746 2.0e-07 61.6 84 47.6
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 7.5e-07 59.7 43 65.1
DCAR_025850 Daucus carota HOM05D005322 ORTHO05D006746 3.7e-06 57.4 104 33.7


User provided reference genes

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