Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G104200 Manihot esculenta HOM05D007867 ORTHO05D009953 1.0e-17 92.8 66 100.0
Nn5g29770 Nelumbo nucifera HOM05D007867 ORTHO05D009953 1.0e-17 92.8 66 100.0
Gohir.D03G034400 Gossypium hirsutum HOM05D007867 ORTHO05D009953 1.4e-17 92.4 66 98.5
Gorai.003G036100 Gossypium raimondii HOM05D007867 ORTHO05D009953 1.4e-17 92.4 66 98.5
GSVIVG01006775001 Vitis vinifera HOM05D007867 ORTHO05D009953 2.3e-17 91.7 66 98.5
CiPaw.07G042200 Carya illinoinensis HOM05D007867 ORTHO05D009953 4.0e-17 90.9 66 98.5
Gohir.A11G209001 Gossypium hirsutum HOM05D007867 ORTHO05D009953 6.8e-17 90.1 66 86.4
Nn1g05680 Nelumbo nucifera HOM05D007867 ORTHO05D009953 6.8e-17 90.1 66 84.8
Thecc.01G083600 Theobroma cacao HOM05D007867 ORTHO05D009953 6.8e-17 90.1 66 83.3
Zm00001eb061250 Zea mays HOM05D007867 ORTHO05D009953 2.8e-15 84.7 70 82.9
ATR0800G156 Amborella trichopoda HOM05D007867 ORTHO05D009953 6.3e-15 83.6 66 83.3
Sc03g0000590 Simmondsia chinensis HOM05D007867 ORTHO05D009953 6.3e-15 83.6 71 77.5
Dinv36978 Davidia involucrata HOM05D007867 ORTHO05D009953 2.4e-14 81.6 69 75.4
Actinidia36378 Actinidia chinensis HOM05D007867 ORTHO05D009953 5.4e-14 80.5 67 62.7
Lalb_Chr09g0325761 Lupinus albus HOM05D007867 ORTHO05D009953 7.0e-14 80.1 66 75.8
CiPaw.08G145800 Carya illinoinensis HOM05D007867 ORTHO05D009953 3.5e-13 77.8 65 75.4
Gohir.D11G214500 Gossypium hirsutum HOM05D007867 ORTHO05D009953 3.5e-13 77.8 66 78.8
RcHm_v2.0_Chr2g0109971 Rosa chinensis HOM05D007867 ORTHO05D009953 3.5e-13 77.8 67 74.6
Sed0014306 Sechium edule HOM05D007867 ORTHO05D009953 3.5e-13 77.8 64 78.1
FvH4_1g18950 Fragaria vesca HOM05D007867 ORTHO05D009953 5.9e-13 77.0 69 72.5
vmacro19595 Vaccinium macrocarpon HOM05D007867 ORTHO05D009953 1.0e-12 76.3 66 78.8
Cc07_g07830 Coffea canephora HOM05D007867 ORTHO05D009953 1.7e-12 75.5 66 90.9
Haze_03934 Corylus avellana HOM05D007867 ORTHO05D009953 2.3e-12 75.1 66 89.4
Gorai.007G230100 Gossypium raimondii HOM05D007867 ORTHO05D009953 2.3e-12 75.1 66 89.4
CiPaw.05G026800 Carya illinoinensis HOM05D007867 ORTHO05D009953 3.9e-12 74.3 64 78.1
MD10G1057100 Malus domestica HOM05D007867 ORTHO05D009953 3.9e-12 74.3 68 76.5
Ca_13472_v3 Cicer arietinum L. HOM05D007867 ORTHO05D009953 2.5e-11 71.6 68 79.4
Cpa.g.c33237.1 Carica papaya HOM05D007867 ORTHO05D009953 3.3e-11 71.2 66 84.8
Cc02_g20570 Coffea canephora HOM05D007867 ORTHO05D009953 4.3e-11 70.9 66 81.8
Os07g0191650 Oryza sativa ssp. japonica HOM05D007867 ORTHO05D009953 5.6e-11 70.5 78 70.5
Gohir.A02G146200 Gossypium hirsutum HOM05D007867 ORTHO05D009953 1.2e-10 69.3 66 84.8
Medtr5g030870 Medicago truncatula HOM05D007867 ORTHO05D009953 1.2e-10 69.3 65 86.2
EL10Ac9g22129 Beta vulgaris HOM05D007867 ORTHO05D009953 2.1e-10 68.6 73 71.2
Ciclev10027423m.g Citrus clementina HOM05D007867 ORTHO05D009953 2.1e-10 68.6 67 85.1
Glyma.09G202700 Glycine max HOM05D007867 ORTHO05D009953 2.1e-10 68.6 66 80.3
Hma1.2p1_1119F.1_g259180 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 2.1e-10 68.6 45 86.7
CSS0005733 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 2.8e-10 68.2 42 76.2
MBI16_g26237_MAGBIO Magnolia biondii HOM05D007867 ORTHO05D009953 1.4e-09 65.9 66 83.3
CiPaw.08G145600 Carya illinoinensis HOM05D007867 ORTHO05D009953 1.8e-09 65.5 68 67.6
Lj2g0008804 Lotus japonicus HOM05D007867 ORTHO05D009953 2.3e-09 65.1 70 67.1
CiPaw.08G128500 Carya illinoinensis HOM05D007867 ORTHO05D009953 3.1e-09 64.7 67 62.7
Potri.015G025600 Populus trichocarpa HOM05D007867 ORTHO05D009953 3.1e-09 64.7 64 65.6
Hund00401 Selenicereus undatus HOM05D007867 ORTHO05D009953 3.1e-09 64.7 74 71.6
Gohir.A05G401300 Gossypium hirsutum HOM05D007867 ORTHO05D009953 4.0e-09 64.3 75 58.7
Oeu033792.2 Olea europaea HOM05D007867 ORTHO05D009953 6.8e-09 63.5 38 76.3
FAN28G0366 Fragaria x ananassa HOM05D007867 ORTHO05D009953 8.9e-09 63.2 46 71.7
RhsimUnG0066800 Rhododendron simsii HOM05D007867 ORTHO05D009953 1.2e-08 62.8 77 46.8
Potri.015G025700 Populus trichocarpa HOM05D007867 ORTHO05D009953 2.6e-08 61.6 66 78.8
Prupe.8G075700 Prunus persica HOM05D007867 ORTHO05D009953 2.6e-08 61.6 68 80.9
TPR.G40500 Trifolium pratense HOM05D007867 ORTHO05D009953 2.6e-08 61.6 27 96.3
Zm00001eb302470 Zea mays HOM05D007867 ORTHO05D009953 2.6e-08 61.6 79 70.9
DCAR_021457 Daucus carota HOM05D000419 ORTHO05D000692 2.2e-07 58.5 40 80.0
Lalb_Chr16g0383101 Lupinus albus HOM05D007867 ORTHO05D009953 2.9e-07 58.2 46 67.4
Nitab4.5_0000036g0410 Nicotiana tabacum HOM05D007867 ORTHO05D009953 4.9e-07 57.4 62 82.3
Nitab4.5_0009046g0010 Nicotiana tabacum HOM05D007867 ORTHO05D009953 4.9e-07 57.4 62 82.3
Prupe.6G209900 Prunus persica HOM05D007867 ORTHO05D009953 4.9e-07 57.4 66 75.8
Lalb_Chr16g0381471 Lupinus albus HOM05D007867 ORTHO05D009953 1.1e-06 56.2 64 78.1
Hma1.2p1_0908F.1_g235690 Hydrangea macrophylla HOM05D007867 ORTHO05D009953 1.9e-06 55.5 61 80.3
Potri.012G034400 Populus trichocarpa HOM05D007867 ORTHO05D009953 2.4e-06 55.1 67 77.6
CSS0034185 Camellia sinensis var. sinensis HOM05D007867 ORTHO05D009953 3.2e-06 54.7 24 95.8
Solyc02g063440.3 Solanum lycopersicum HOM05D007867 ORTHO05D009953 4.1e-06 54.3 68 76.5
ClCG09G016440 Citrullus lanatus HOM05D007867 ORTHO05D009953 7.0e-06 53.5 46 71.7


User provided reference genes

Program Settings