Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 1.4e-53 212.6 104 100.0
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.6e-33 146.0 104 72.1
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.7e-30 136.0 87 78.2
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 4.9e-30 134.4 101 67.3
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 2.5e-29 132.1 101 69.3
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 4.2e-29 131.3 90 76.7
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.6e-28 129.4 104 63.5
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 8.7e-27 123.6 96 66.7
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 2.5e-26 122.1 100 64.0
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 3.3e-26 121.7 106 61.3
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 1.6e-25 119.4 102 63.7
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.4e-24 116.3 97 64.9
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 1.8e-24 115.9 100 61.0
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 9.0e-24 113.6 106 57.5
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 9.0e-24 113.6 99 60.6
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 1.5e-23 112.8 97 61.9
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 1.5e-23 112.8 101 61.4
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 2.0e-23 112.5 101 58.4
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 7.6e-23 110.5 101 58.4
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 7.6e-23 110.5 106 57.5
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 1.3e-22 109.8 87 63.2
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 2.9e-22 108.6 101 56.4
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.1e-21 106.7 100 57.0
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 1.6e-20 102.8 100 56.0
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 2.7e-20 102.1 95 56.8
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 3.5e-20 101.7 88 59.1
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.0e-19 100.1 102 51.0
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 1.0e-19 100.1 102 51.0
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 1.3e-19 99.8 96 57.3
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 1.8e-19 99.4 94 53.2
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 2.3e-19 99.0 97 52.6
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 2.3e-19 99.0 87 58.6
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 3.9e-19 98.2 88 59.1
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 5.1e-19 97.8 100 54.0
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 2.5e-18 95.5 102 49.0
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 5.7e-18 94.4 98 53.1
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 7.4e-18 94.0 88 52.3
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.6e-17 92.8 82 54.9
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 2.8e-17 92.0 82 61.0
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.7e-17 91.7 77 59.7
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.7e-17 91.7 77 59.7
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 4.8e-17 91.3 83 60.2
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.4e-16 89.7 98 51.0
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 3.1e-16 88.6 108 49.1
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 3.1e-16 88.6 86 55.8
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 4.1e-16 88.2 83 51.8
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 4.1e-16 88.2 84 56.0
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 9.0e-16 87.0 79 54.4
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 1.2e-15 86.7 86 55.8
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 1.2e-15 86.7 79 51.9
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 2.6e-15 85.5 82 52.4
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 7.7e-15 84.0 86 53.5
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 7.7e-15 84.0 77 54.5
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 1.3e-14 83.2 88 52.3
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 1.3e-14 83.2 101 44.6
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 2.2e-14 82.4 77 57.1
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 3.8e-14 81.6 99 44.4
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.8e-14 81.6 64 65.6
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 5.0e-14 81.3 87 50.6
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.2e-13 78.6 77 54.5
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 3.6e-12 75.1 79 48.1
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 6.1e-12 74.3 84 48.8
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 6.1e-12 74.3 81 49.4
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 8.8e-11 70.5 77 48.1
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.5e-10 69.7 81 46.9
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 1.5e-10 69.7 81 46.9
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 3.3e-10 68.6 78 50.0
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 3.3e-10 68.6 78 46.2
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 3.3e-10 68.6 78 46.2
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 3.3e-10 68.6 81 46.9
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 3.3e-10 68.6 82 45.1
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 7.4e-10 67.4 78 47.4
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 9.7e-10 67.0 78 47.4
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 9.7e-10 67.0 78 44.9
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 1.3e-09 66.6 79 44.3
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 1.3e-09 66.6 79 44.3
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 1.7e-09 66.2 78 47.4
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 3.7e-09 65.1 79 41.8
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 3.7e-09 65.1 79 41.8
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 3.7e-09 65.1 79 41.8
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 4.8e-09 64.7 78 46.2
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 6.3e-09 64.3 79 40.5
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 8.2e-09 63.9 78 43.6
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 1.1e-08 63.5 79 43.0
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 1.1e-08 63.5 78 41.0
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 1.8e-08 62.8 99 37.4
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 3.8e-06 55.1 82 41.5


User provided reference genes

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