Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 5.5e-108 394.4 214 100.0
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 4.4e-65 251.9 213 63.8
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 7.0e-63 244.6 207 63.3
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 7.0e-63 244.6 210 64.3
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 5.9e-62 241.5 210 61.4
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 3.8e-61 238.8 208 63.9
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.9e-60 236.5 208 63.0
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 5.5e-60 235.0 208 63.0
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.2e-59 233.8 210 62.9
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 3.6e-59 232.3 208 62.5
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 4.0e-58 228.8 207 58.5
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 8.8e-58 227.6 207 58.0
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 2.6e-57 226.1 211 56.9
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.6e-57 226.1 207 58.5
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 5.7e-57 224.9 209 56.9
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.3e-56 223.8 207 58.5
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 1.4e-55 220.3 211 58.3
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.8e-55 219.9 211 57.8
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 5.4e-55 218.4 209 55.5
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 2.7e-54 216.1 209 53.6
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.5e-54 215.7 210 56.2
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 3.5e-54 215.7 215 55.3
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 4.5e-54 215.3 195 60.5
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.3e-53 213.8 210 56.2
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.8e-53 212.2 207 55.6
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 3.8e-53 212.2 207 53.6
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 6.5e-53 211.5 206 56.3
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 8.5e-53 211.1 214 54.7
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 8.5e-53 211.1 209 57.9
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 1.5e-52 210.3 209 57.9
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.9e-52 209.9 209 53.6
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 3.2e-52 209.1 209 57.4
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 4.2e-52 208.8 208 55.3
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 5.5e-52 208.4 210 54.3
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 2.1e-51 206.5 205 56.1
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.1e-51 206.5 208 56.7
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 2.7e-51 206.1 211 55.0
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 2.7e-51 206.1 209 55.0
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 2.7e-51 206.1 209 56.9
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 3.6e-51 205.7 207 54.1
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.0e-50 204.1 205 56.6
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 2.3e-50 203.0 203 55.2
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 4.0e-50 202.2 207 53.1
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 6.8e-50 201.4 208 55.3
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 3.4e-49 199.1 202 55.4
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 7.5e-49 198.0 209 50.7
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 7.5e-49 198.0 203 54.7
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 4.9e-48 195.3 210 53.8
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 8.3e-48 194.5 212 52.8
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.4e-47 193.7 209 51.7
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.4e-47 193.7 210 52.4
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 4.1e-47 192.2 196 54.6
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 7.0e-47 191.4 210 50.5
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 1.2e-46 190.7 210 52.4
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.2e-46 190.7 210 51.4
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 2.7e-46 189.5 210 50.5
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 3.5e-46 189.1 210 52.9
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 4.5e-46 188.7 210 51.4
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 5.9e-46 188.3 205 51.7
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 7.7e-46 188.0 194 54.1
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 1.0e-45 187.6 194 53.6
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 1.0e-45 187.6 194 53.6
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.0e-45 187.6 210 51.4
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 1.3e-45 187.2 194 54.1
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 2.3e-45 186.4 208 49.5
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 5.0e-45 185.3 213 48.8
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.5e-44 183.7 211 50.7
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 1.5e-44 183.7 201 51.7
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 4.3e-44 182.2 207 51.7
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 7.3e-44 181.4 191 53.4
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 7.3e-44 181.4 210 48.6
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 1.2e-43 180.6 209 48.8
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.2e-43 180.6 210 50.0
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 1.6e-43 180.3 209 48.8
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 3.6e-43 179.1 193 52.8
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 4.7e-43 178.7 210 47.6
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 1.0e-42 177.6 210 47.6
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.4e-42 177.2 210 48.6
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 1.8e-42 176.8 209 49.3
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.3e-42 176.4 210 48.6
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 3.0e-42 176.0 209 50.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 4.0e-42 175.6 210 47.1
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 4.0e-42 175.6 210 49.0
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 6.8e-42 174.9 210 46.2
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 8.9e-42 174.5 216 47.7
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 1.2e-41 174.1 215 47.9
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 3.4e-41 172.6 210 47.6
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 4.4e-41 172.2 201 46.8
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 4.4e-41 172.2 210 46.2
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 5.7e-41 171.8 210 49.0
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 5.7e-41 171.8 210 48.1
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 2.2e-40 169.9 209 47.4
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 2.9e-40 169.5 212 45.3
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 3.7e-40 169.1 212 49.5
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 4.9e-40 168.7 209 46.9
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 6.4e-40 168.3 210 47.6
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 8.3e-40 167.9 215 47.9
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.1e-39 167.5 210 45.7
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.1e-39 167.5 207 48.8
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 1.1e-39 167.5 210 46.2
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 1.4e-39 167.2 214 49.1
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 5.4e-39 165.2 217 46.5
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 9.2e-39 164.5 196 46.9
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 1.6e-38 163.7 214 48.1
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 1.6e-38 163.7 210 46.2
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 3.5e-38 162.5 210 47.6
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 3.5e-38 162.5 210 44.8
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 3.5e-38 162.5 210 48.1
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 5.9e-38 161.8 181 50.8
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 1.0e-37 161.0 212 45.3
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 1.7e-37 160.2 198 45.5
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 1.7e-37 160.2 196 46.9
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 3.9e-37 159.1 214 46.3
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 6.6e-37 158.3 196 46.9
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 1.5e-36 157.1 212 44.3
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 4.3e-36 155.6 210 46.7
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 1.6e-35 153.7 212 42.0
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.6e-35 152.5 198 46.0
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 6.2e-35 151.8 206 45.6
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 8.0e-35 151.4 214 45.3
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.0e-34 151.0 207 44.9
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.8e-34 150.2 212 42.5
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 2.3e-34 149.8 209 42.1
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 8.9e-34 147.9 212 45.3
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 8.9e-34 147.9 216 43.1
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 4.4e-33 145.6 216 40.7
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 1.3e-32 144.1 185 47.0
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.4e-31 140.6 219 40.2
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 1.6e-30 137.1 211 41.7
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.0e-30 135.2 207 42.5
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 7.8e-30 134.8 202 42.6
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.0e-29 134.4 186 44.6
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.3e-29 134.0 216 42.1
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 2.3e-29 133.3 210 39.0
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 3.9e-29 132.5 163 48.5
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 5.0e-29 132.1 210 40.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 6.6e-29 131.7 212 41.5
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 1.1e-28 131.0 138 52.2
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.1e-28 131.0 205 40.0
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 1.5e-28 130.6 210 40.5
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 9.5e-28 127.9 217 38.2
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 6.8e-26 121.7 189 40.7
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.5e-25 120.6 211 38.9
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 4.4e-25 119.0 198 37.4
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 2.2e-24 116.7 216 38.0
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 4.6e-22 109.0 203 35.5
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.2e-19 100.9 116 44.0
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 3.6e-19 99.4 115 48.7
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 5.2e-18 95.5 203 31.5
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 5.4e-15 85.5 137 40.1
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.1e-15 85.1 134 41.0
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 2.4e-10 70.1 55 67.3
BolC6t39019H Brassica oleracea HOM05D004648 ORTHO05D031748 9.9e-09 64.7 66 51.5
AUR62014356 Chenopodium quinoa HOM05D004648 ORTHO05D137809 7.8e-06 55.1 90 45.6


User provided reference genes

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