Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G096700 Manihot esculenta HOM05D008176 ORTHO05D004477 2.0e-66 255.8 138 100.0
Manes.12G129900 Manihot esculenta HOM05D008176 ORTHO05D004477 5.5e-37 157.9 143 64.3
Thecc.01G095600 Theobroma cacao HOM05D008176 ORTHO05D004477 5.0e-22 108.2 142 50.0
Potri.005G072000 Populus trichocarpa HOM05D008176 ORTHO05D004477 2.5e-21 105.9 142 47.2
Sabra07G0080300 Salix brachista HOM05D008176 ORTHO05D004477 1.6e-20 103.2 139 46.0
Duzib264G0386 Durio zibethinus HOM05D008176 ORTHO05D004477 6.8e-19 97.8 148 45.9
COL.COLO4_27295 Corchorus olitorius HOM05D008176 ORTHO05D004477 8.9e-19 97.4 149 45.0
Duzib187G0825 Durio zibethinus HOM05D008176 ORTHO05D004477 1.2e-18 97.1 141 43.3
QL06p048130 Quercus lobata HOM05D008176 ORTHO05D004477 2.6e-18 95.9 138 44.9
Atru.chr3.1344 Acer truncatum HOM05D008176 ORTHO05D004477 4.4e-18 95.1 138 47.8
Gorai.007G059700 Gossypium raimondii HOM05D008176 ORTHO05D004477 5.8e-18 94.7 151 43.7
Gohir.A11G051100 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.2e-17 92.8 151 42.4
TWI53G0271 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 6.4e-17 91.3 138 49.3
Potri.007G097000 Populus trichocarpa HOM05D008176 ORTHO05D004477 1.1e-16 90.5 140 48.6
Gohir.A02G129700 Gossypium hirsutum HOM05D008176 ORTHO05D004477 3.2e-16 89.0 132 46.2
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 9.2e-16 87.4 137 43.1
Cpa.g.sc55.74 Carica papaya HOM05D008176 ORTHO05D004477 1.2e-15 87.0 138 44.9
Gorai.003G041400 Gossypium raimondii HOM05D008176 ORTHO05D004477 3.5e-15 85.5 132 44.7
Gohir.D03G040500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 4.6e-15 85.1 132 44.7
Gohir.D11G054500 Gossypium hirsutum HOM05D008176 ORTHO05D004477 7.8e-15 84.3 155 41.9
Nn1g05455 Nelumbo nucifera HOM05D008046 ORTHO05D004477 7.8e-15 84.3 129 48.1
Gorai.007G235100 Gossypium raimondii HOM05D008176 ORTHO05D004477 1.0e-14 84.0 143 38.5
Gohir.A11G204400 Gossypium hirsutum HOM05D008176 ORTHO05D004477 1.3e-14 83.6 143 39.9
Gohir.D11G218800 Gossypium hirsutum HOM05D008176 ORTHO05D004477 2.3e-14 82.8 139 38.1
Sabra05G0058900 Salix brachista HOM05D008176 ORTHO05D004477 9.5e-13 77.4 140 43.6
CiPaw.04G103600 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.6e-12 76.6 137 39.4
Nitab4.5_0000128g0240 Nicotiana tabacum HOM05D008176 ORTHO05D004477 2.1e-12 76.3 133 38.3
CiPaw.03G145800 Carya illinoinensis HOM05D008176 ORTHO05D004477 1.8e-11 73.2 135 38.5
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 1.8e-11 73.2 139 40.3
TWI74G1149 Tripterygium wilfordii HOM05D008176 ORTHO05D004477 1.8e-11 73.2 135 43.0
Sopen11g005030 Solanum pennellii HOM05D008176 ORTHO05D004477 3.1e-11 72.4 142 35.9
TAR625G0942 Trochodendron aralioides HOM05D008046 ORTHO05D004477 4.0e-11 72.0 132 39.4
Nitab4.5_0012818g0010 Nicotiana tabacum HOM05D008176 ORTHO05D004477 5.2e-11 71.6 128 35.9
Ca_08988_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.2e-10 70.5 133 36.8
Ciclev10026640m.g Citrus clementina HOM05D008176 ORTHO05D004477 2.0e-10 69.7 141 43.3
SalBow3G2508 Salvia bowleyana HOM05D029310 ORTHO05D004477 7.5e-10 67.8 130 40.0
SalBow3G3284 Salvia bowleyana HOM05D029310 ORTHO05D004477 7.5e-10 67.8 130 40.0
Haze_24851 Corylus avellana HOM05D008176 ORTHO05D004477 9.8e-10 67.4 135 44.4
Solyc11g010250.1 Solanum lycopersicum HOM05D008176 ORTHO05D004477 9.8e-10 67.4 143 35.7
Sopen05g029890 Solanum pennellii HOM05D008176 ORTHO05D004477 1.7e-09 66.6 133 36.8
Aqoxy6G00716 Aquilegia oxysepala HOM05D008046 ORTHO05D004477 2.2e-09 66.2 137 39.4
TAR381G0533 Trochodendron aralioides HOM05D008046 ORTHO05D004477 2.9e-09 65.9 128 44.5
Medtr8g089920 Medicago truncatula HOM05D008176 ORTHO05D004477 3.7e-09 65.5 133 34.6
PGSC0003DMG400016149 Solanum tuberosum HOM05D008176 ORTHO05D004477 3.7e-09 65.5 139 36.0
CARHR279260 Cardamine hirsuta HOM05D010563 ORTHO05D012591 8.3e-09 64.3 137 35.0
Sed0019031 Sechium edule HOM05D022809 ORTHO05D025100 8.3e-09 64.3 131 40.5
TPR.G6203 Trifolium pratense HOM05D008176 ORTHO05D004477 8.3e-09 64.3 136 35.3
CANSAT01G0943 Cannabis sativa HOM05D013332 ORTHO05D004477 1.4e-08 63.5 152 36.8
Carub.0008s2618 Capsella rubella HOM05D010563 ORTHO05D012591 1.4e-08 63.5 139 36.7
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.4e-08 62.8 139 35.3
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 2.4e-08 62.8 133 37.6
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 2.4e-08 62.8 132 36.4
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 3.2e-08 62.4 139 34.5
SGA_v2.0_scaffold108G30894 Striga asiatica HOM05D008176 ORTHO05D004477 3.2e-08 62.4 146 32.2
MSTRG.23362 Avicennia marina HOM05D008176 ORTHO05D004477 4.1e-08 62.0 137 36.5
Dinv13234 Davidia involucrata HOM05D008176 ORTHO05D004477 5.4e-08 61.6 135 34.1
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 5.4e-08 61.6 130 40.0
Glyma.11G242100 Glycine max HOM05D008176 ORTHO05D004477 7.1e-08 61.2 125 36.0
Gohir.D12G082301 Gossypium hirsutum HOM05D008176 ORTHO05D004477 7.1e-08 61.2 134 36.6
PGSC0003DMG400016792 Solanum tuberosum HOM05D008176 ORTHO05D004477 9.2e-08 60.8 133 35.3
Gorai.008G090900 Gossypium raimondii HOM05D008176 ORTHO05D004477 1.2e-07 60.5 134 35.8
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.2e-07 60.5 133 37.6
C09p10430 Brassica napus HOM05D010563 ORTHO05D012591 2.1e-07 59.7 135 34.1
Glyma.08G133100 Glycine max HOM05D008176 ORTHO05D004477 2.1e-07 59.7 121 35.5
Sc03g0000170 Simmondsia chinensis HOM05D031888 ORTHO05D004477 2.1e-07 59.7 139 33.8
BolC9t53945H Brassica oleracea HOM05D010563 ORTHO05D012591 2.7e-07 59.3 129 35.7
Cfa002600 Carpinus fangiana HOM05D008176 ORTHO05D004477 2.7e-07 59.3 137 40.1
Lj4g0008028 Lotus japonicus HOM05D008176 ORTHO05D004477 6.0e-07 58.2 133 35.3
Glyma.05G175800 Glycine max HOM05D008176 ORTHO05D004477 1.0e-06 57.4 121 33.1
Hma1.2p1_0019F.1_g013800 Hydrangea macrophylla HOM05D013332 ORTHO05D004477 1.0e-06 57.4 157 32.5
Ca_16509_v3 Cicer arietinum L. HOM05D008176 ORTHO05D004477 1.3e-06 57.0 130 32.3
DCAR_014203 Daucus carota HOM05D013332 ORTHO05D004477 1.3e-06 57.0 104 39.4
TPR.G16006 Trifolium pratense HOM05D008176 ORTHO05D004477 1.3e-06 57.0 140 35.7
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 1.7e-06 56.6 142 35.2
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 2.3e-06 56.2 132 34.8
A06p32160 Brassica napus HOM05D010563 ORTHO05D012591 5.1e-06 55.1 127 37.0
BraA06t26144Z Brassica rapa HOM05D010563 ORTHO05D012591 5.1e-06 55.1 125 36.8
CsaV3_UNG148160 Cucumis sativus L. HOM05D022809 ORTHO05D025100 5.1e-06 55.1 129 38.8
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 5.1e-06 55.1 127 38.6
Lsat_1_v5_gn_1_3180 Lactuca sativa HOM05D008046 ORTHO05D004477 6.6e-06 54.7 134 32.1
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 6.6e-06 54.7 123 42.3
C03p60780 Brassica napus HOM05D010563 ORTHO05D012591 8.6e-06 54.3 125 36.8
Medtr3g086830 Medicago truncatula HOM05D008176 ORTHO05D004477 8.6e-06 54.3 128 32.8
Phvul.002G260800 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 8.6e-06 54.3 132 34.1


User provided reference genes

Program Settings