Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 6.4e-185 650.6 327 100.0
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.7e-105 386.7 321 62.0
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.1e-102 377.5 314 63.1
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.4e-102 377.1 312 64.1
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 5.2e-102 375.2 341 60.1
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 3.4e-101 372.5 316 63.9
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 3.7e-100 369.0 327 59.0
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 4.9e-100 368.6 315 62.5
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 7.1e-99 364.8 314 59.2
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 3.9e-97 359.0 313 61.3
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 5.6e-96 355.1 321 58.9
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.6e-95 353.6 316 58.5
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 6.2e-95 351.7 314 58.9
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 3.1e-94 349.4 313 58.8
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 8.9e-94 347.8 312 60.9
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 5.8e-93 345.1 312 59.9
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 2.2e-92 343.2 312 59.6
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.4e-91 340.5 315 56.8
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 5.4e-91 338.6 315 59.0
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 4.6e-90 335.5 315 57.8
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 7.8e-90 334.7 317 56.2
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 2.3e-89 333.2 320 58.4
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 3.0e-89 332.8 313 55.9
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 3.9e-89 332.4 312 57.4
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 5.1e-89 332.0 312 57.1
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 6.6e-89 331.6 312 57.1
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.5e-88 330.5 313 55.0
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.6e-87 327.0 318 55.3
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 2.1e-87 326.6 359 51.8
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.1e-86 324.3 313 53.7
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 2.4e-86 323.2 315 54.0
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 3.1e-86 322.8 318 54.4
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 4.0e-86 322.4 315 54.0
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 6.9e-86 321.6 319 54.9
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 9.0e-86 321.2 319 54.9
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 1.2e-85 320.9 312 55.1
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 9.9e-85 317.8 314 55.1
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 9.9e-85 317.8 317 55.5
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.7e-84 317.0 318 54.1
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 1.7e-84 317.0 312 56.4
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 2.9e-84 316.2 317 54.3
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 2.9e-84 316.2 312 53.8
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 3.8e-84 315.8 329 54.7
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 6.4e-84 315.1 323 54.5
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.9e-83 313.5 324 53.1
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 3.2e-83 312.8 315 55.6
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 5.4e-83 312.0 311 53.7
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 7.1e-83 311.6 312 58.0
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.2e-82 310.8 312 52.9
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 3.5e-82 309.3 317 52.4
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 7.8e-82 308.1 300 56.0
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 1.0e-81 307.8 324 52.2
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 1.3e-81 307.4 318 53.1
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.7e-81 307.0 314 52.5
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 3.9e-81 305.8 266 60.9
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 5.1e-81 305.4 314 51.9
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.5e-80 303.1 325 51.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 5.6e-80 302.0 318 52.5
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 9.6e-80 301.2 324 50.9
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 2.4e-78 296.6 319 52.0
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 3.4e-77 292.7 314 50.6
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 5.8e-77 292.0 315 55.2
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 9.9e-77 291.2 327 50.8
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 2.9e-76 289.7 322 52.2
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 5.4e-75 285.4 322 50.3
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.6e-74 283.9 313 51.4
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.6e-74 283.9 400 45.8
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 6.0e-74 282.0 319 51.4
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.8e-73 280.4 281 54.1
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 1.1e-72 277.7 315 50.8
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 1.6e-71 273.9 309 49.2
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 6.2e-71 271.9 315 48.6
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.8e-70 270.4 287 53.0
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 2.4e-70 270.0 317 49.2
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 4.0e-70 269.2 297 50.8
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 1.7e-68 263.8 337 46.6
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 1.0e-65 254.6 352 45.5
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 2.3e-65 253.4 438 38.1
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.1e-64 251.1 212 60.8
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 5.7e-64 248.8 314 46.5
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 3.7e-63 246.1 213 61.0
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 4.0e-62 242.7 199 61.8
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 2.9e-60 236.5 327 44.3
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.9e-59 233.8 338 43.5
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 2.5e-59 233.4 314 43.9
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 5.5e-59 232.3 341 42.5
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 2.3e-57 226.9 312 45.5
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 5.1e-57 225.7 200 59.5
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.5e-56 224.2 315 43.8
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 2.8e-55 219.9 201 54.7
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 8.2e-55 218.4 261 49.4
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.7e-52 210.7 320 41.2
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 6.1e-50 202.2 331 37.8
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 1.8e-49 200.7 367 35.1
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.5e-48 197.6 292 40.4
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 7.4e-48 195.3 348 37.6
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 4.8e-47 192.6 351 37.9
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.2e-44 183.7 212 53.8
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 4.2e-43 179.5 181 51.9
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.6e-42 177.6 462 30.5
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 8.8e-41 171.8 182 52.7
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 5.7e-40 169.1 236 48.3
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 1.3e-39 167.9 233 41.6
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.0e-36 158.3 155 56.8
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.0e-33 148.3 324 36.4
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 3.5e-29 133.3 183 38.8
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 1.3e-23 114.8 90 63.3
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 3.2e-19 100.1 203 32.0
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 2.1e-18 97.4 85 60.0
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.7e-18 97.1 56 83.9
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.0e-17 95.1 120 44.2
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.8e-14 84.3 87 48.3
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.4e-14 84.0 238 29.0
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.1e-11 75.1 62 58.1
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.5e-11 73.9 80 46.2
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.2e-10 71.6 93 44.1
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.4e-09 68.2 67 44.8
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.0e-09 67.0 96 40.6
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.2e-08 65.1 154 31.8


User provided reference genes

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