Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G094101 Manihot esculenta HOM05D007592 ORTHO05D004645 2.9e-91 338.6 174 100.0
Manes.13G090650 Manihot esculenta HOM05D007592 ORTHO05D004645 5.1e-72 274.6 206 75.7
Manes.04G041320 Manihot esculenta HOM05D007592 ORTHO05D004645 3.7e-70 268.5 205 75.1
Manes.07G048750 Manihot esculenta HOM05D007592 ORTHO05D004645 1.4e-61 240.0 178 75.8
Manes.01G069750 Manihot esculenta HOM05D007592 ORTHO05D004645 3.4e-60 235.3 178 74.2
Manes.09G090928 Manihot esculenta HOM05D007592 ORTHO05D004645 2.0e-52 209.5 199 63.8
Manes.16G106550 Manihot esculenta HOM05D007592 ORTHO05D004645 4.5e-44 181.8 123 83.7
Manes.12G071232 Manihot esculenta HOM05D007592 ORTHO05D004645 1.1e-42 177.2 120 83.3
Manes.03G086206 Manihot esculenta HOM05D007592 ORTHO05D004645 2.5e-42 176.0 120 82.5
Manes.15G083266 Manihot esculenta HOM05D007592 ORTHO05D004645 4.1e-37 158.7 113 79.6
Manes.03G096216 Manihot esculenta HOM05D007592 ORTHO05D004645 1.4e-32 143.7 176 51.1
DCAR_018612 Daucus carota HOM05D007592 ORTHO05D004645 2.8e-25 119.4 222 38.3
DCAR_001490 Daucus carota HOM05D007592 ORTHO05D004645 3.6e-25 119.0 222 38.7
Ciclev10016612m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.7e-22 110.2 221 36.7
Atru.chr10.1040 Acer truncatum HOM05D007592 ORTHO05D004645 2.2e-22 109.8 210 37.6
CARHR029530 Cardamine hirsuta HOM05D007592 ORTHO05D004645 2.2e-22 109.8 219 36.1
AL2G23940 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.6e-20 103.6 181 38.7
Oeu029633.1 Olea europaea HOM05D007592 ORTHO05D004645 5.9e-20 101.7 221 35.7
AL8G44460 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 1.0e-19 100.9 190 36.8
Ciclev10023655m.g Citrus clementina HOM05D007592 ORTHO05D004645 1.7e-19 100.1 183 35.5
AT4G10230 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 2.9e-19 99.4 210 34.3
AT1G24380 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 3.8e-19 99.0 211 35.1
Ciclev10027215m.g Citrus clementina HOM05D007592 ORTHO05D004645 8.6e-19 97.8 205 35.1
CANSAT35G0055 Cannabis sativa HOM05D007592 ORTHO05D004645 1.5e-18 97.1 186 36.0
Ciclev10023446m.g Citrus clementina HOM05D007592 ORTHO05D004645 5.6e-18 95.1 214 34.6
Manes.14G157656 Manihot esculenta HOM05D007743 ORTHO05D010219 7.3e-18 94.7 69 71.0
Manes.12G071166 Manihot esculenta HOM05D007743 ORTHO05D010219 1.2e-17 94.0 69 71.0
BraA09t38299Z Brassica rapa HOM05D007592 ORTHO05D004645 1.6e-17 93.6 210 32.9
PGSC0003DMG400037078 Solanum tuberosum HOM05D008583 ORTHO05D004645 1.6e-17 93.6 122 46.7
BolC6t37310H Brassica oleracea HOM05D007592 ORTHO05D004645 2.1e-17 93.2 210 32.4
AT2G13760 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 3.6e-17 92.4 156 39.7
Manes.03G086209 Manihot esculenta HOM05D007592 ORTHO05D004645 3.6e-17 92.4 69 69.6
C06p21250 Brassica napus HOM05D007592 ORTHO05D004645 4.7e-17 92.0 210 32.4
PGSC0003DMG400046067 Solanum tuberosum HOM05D007592 ORTHO05D004645 4.7e-17 92.0 105 51.4
AL6G36070 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 6.1e-17 91.7 216 33.8
Atru.chr12.1217 Acer truncatum HOM05D007592 ORTHO05D004645 4.0e-16 89.0 182 33.5
Atru.chr6.1370 Acer truncatum HOM05D007592 ORTHO05D004645 1.5e-15 87.0 161 37.9
CANSAT64G2577 Cannabis sativa HOM05D007592 ORTHO05D004645 4.4e-15 85.5 206 32.0
CARHR258700 Cardamine hirsuta HOM05D007592 ORTHO05D004645 4.4e-15 85.5 215 31.2
Atru.chr8.1611 Acer truncatum HOM05D007592 ORTHO05D004645 5.8e-15 85.1 185 34.1
CARHR103730 Cardamine hirsuta HOM05D007592 ORTHO05D004645 7.5e-15 84.7 187 34.8
Carub.0004s0678 Capsella rubella HOM05D007592 ORTHO05D004645 1.3e-14 84.0 218 30.3
Atru.chr11.101 Acer truncatum HOM05D007592 ORTHO05D004645 1.7e-14 83.6 192 33.9
PGSC0003DMG400013032 Solanum tuberosum HOM05D007592 ORTHO05D004645 1.7e-14 83.6 155 37.4
Ciclev10033648m.g Citrus clementina HOM05D007592 ORTHO05D004645 2.2e-14 83.2 165 36.4
Manes.15G155750 Manihot esculenta HOM05D007743 ORTHO05D010219 4.9e-14 82.0 61 68.9
Oeu023351.1 Olea europaea HOM05D007592 ORTHO05D004645 1.1e-13 80.9 176 35.2
Atru.chr5.2435 Acer truncatum HOM05D007743 ORTHO05D004645 2.4e-13 79.7 217 31.3
AT1G66235 Arabidopsis thaliana HOM05D007592 ORTHO05D004645 2.0e-12 76.6 180 32.2
PGSC0003DMG400002254 Solanum tuberosum HOM05D007592 ORTHO05D004645 2.7e-12 76.3 107 43.0
Rhsim08G0115200 Rhododendron simsii HOM05D007743 ORTHO05D004645 1.3e-11 73.9 223 31.8
Atru.chr8.1335 Acer truncatum HOM05D007592 ORTHO05D004645 1.7e-11 73.6 158 34.8
CSS0032344 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 1.7e-11 73.6 232 28.4
Atru.chr10.191 Acer truncatum HOM05D007592 ORTHO05D004645 3.0e-11 72.8 104 42.3
SalBow3G0485 Salvia bowleyana HOM05D020195 ORTHO05D023117 5.0e-11 72.0 159 34.0
CSS0013406 Camellia sinensis var. sinensis HOM05D007743 ORTHO05D004645 1.1e-10 70.9 232 26.3
Atru.chr6.863 Acer truncatum HOM05D007592 ORTHO05D004645 1.5e-10 70.5 170 34.7
PGSC0003DMG400006215 Solanum tuberosum HOM05D007592 ORTHO05D004645 1.5e-10 70.5 106 41.5
PGSC0003DMG400029060 Solanum tuberosum HOM05D007592 ORTHO05D004645 3.3e-10 69.3 99 42.4
FAN09G3614 Fragaria x ananassa HOM05D007743 ORTHO05D004645 4.3e-10 68.9 189 31.2
FAN26G1874 Fragaria x ananassa HOM05D007743 ORTHO05D004645 9.5e-10 67.8 194 29.9
PGSC0003DMG400016288 Solanum tuberosum HOM05D005913 ORTHO05D007138 9.5e-10 67.8 84 48.8
FAN09G0033 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.2e-09 67.4 194 29.9
FAN18G2940 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.2e-09 67.4 194 29.9
Atru.chr3.1639 Acer truncatum HOM05D007592 ORTHO05D004645 1.6e-09 67.0 103 38.8
FAN05G2464 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.6e-09 67.0 194 29.9
FAN08G2536 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.6e-09 67.0 194 29.9
FAN08G2971 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.6e-09 67.0 194 29.9
FAN18G3916 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.6e-09 67.0 194 29.9
FAN26G1586 Fragaria x ananassa HOM05D007743 ORTHO05D004645 1.6e-09 67.0 194 29.9
Atru.chr13.1766 Acer truncatum HOM05D007592 ORTHO05D004645 2.8e-09 66.2 205 28.8
FAN09G4280 Fragaria x ananassa HOM05D007743 ORTHO05D004645 3.6e-09 65.9 194 29.9
FvH4_2g02401 Fragaria vesca HOM05D007743 ORTHO05D010219 1.1e-08 64.3 191 29.8
Atru.chr4.1791 Acer truncatum HOM05D007592 ORTHO05D004645 1.8e-08 63.5 106 37.7
Migut.A00242 Erythranthe guttata HOM05D007592 ORTHO05D004645 5.2e-08 62.0 223 28.3
Atru.chr3.1033 Acer truncatum HOM05D007592 ORTHO05D004645 1.2e-07 60.8 142 30.3
Oeu019651.1 Olea europaea HOM05D007592 ORTHO05D004645 2.0e-07 60.1 192 28.1
BcaB01g01748 Brassica carinata HOM05D007743 ORTHO05D004645 3.4e-07 59.3 66 43.9
AL9U10800 Arabidopsis lyrata HOM05D007592 ORTHO05D004645 4.4e-07 58.9 85 41.2
BcaB07g33427 Brassica carinata HOM05D007743 ORTHO05D004645 4.4e-07 58.9 131 31.3
BcaC01g02275 Brassica carinata HOM05D007743 ORTHO05D004645 7.5e-07 58.2 64 42.2
BcaB02g10737 Brassica carinata HOM05D007743 ORTHO05D004645 9.8e-07 57.8 65 40.0
RcHm_v2.0_Chr6g0296991 Rosa chinensis HOM05D007743 ORTHO05D004645 9.8e-07 57.8 191 29.8
BcaB04g19609 Brassica carinata HOM05D007743 ORTHO05D004645 2.2e-06 56.6 88 36.4
BcaB06g28792 Brassica carinata HOM05D007743 ORTHO05D004645 2.2e-06 56.6 88 35.2
Thhalv10019741m.g Eutrema salsugineum HOM05D007592 ORTHO05D004645 2.2e-06 56.6 181 28.2
C04p29390 Brassica napus HOM05D007592 ORTHO05D004645 2.9e-06 56.2 134 32.1
BcaNung00662 Brassica carinata HOM05D007592 ORTHO05D004645 4.9e-06 55.5 115 33.0
Ciclev10003950m.g Citrus clementina HOM05D007592 ORTHO05D004645 4.9e-06 55.5 66 47.0
Atru.chr11.1181 Acer truncatum HOM05D000214 ORTHO05D000131 6.4e-06 55.1 63 46.0
Atru.ctg24.16 Acer truncatum HOM05D007592 ORTHO05D004645 6.4e-06 55.1 99 37.4
SGA_v2.0_scaffold211G42135 Striga asiatica HOM05D007592 ORTHO05D004645 6.4e-06 55.1 164 29.9


User provided reference genes

Program Settings