Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G093516 Manihot esculenta HOM05D005870 ORTHO05D007216 2.0e-81 305.8 167 100.0
Potri.007G093700 Populus trichocarpa HOM05D005870 ORTHO05D007216 5.3e-58 228.0 168 78.6
Ciclev10026623m.g Citrus clementina HOM05D005870 ORTHO05D007216 1.4e-55 219.9 164 77.4
Atru.chr4.42 Acer truncatum HOM05D005870 ORTHO05D007216 1.0e-53 213.8 175 73.1
Thecc.01G100700 Theobroma cacao HOM05D005870 ORTHO05D007216 2.3e-53 212.6 171 71.3
TAR381G0757 Trochodendron aralioides HOM05D005870 ORTHO05D007216 5.1e-53 211.5 165 74.5
Duzib147G1590 Durio zibethinus HOM05D005870 ORTHO05D007216 2.5e-52 209.1 165 72.1
COL.COLO4_27254 Corchorus olitorius HOM05D005870 ORTHO05D007216 2.1e-51 206.1 171 70.2
Dinv13195 Davidia involucrata HOM05D005870 ORTHO05D007216 2.1e-51 206.1 166 74.1
Duzib187G0334 Durio zibethinus HOM05D005870 ORTHO05D007216 2.1e-51 206.1 171 70.8
Gohir.A11G202300 Gossypium hirsutum HOM05D005870 ORTHO05D007216 3.7e-51 205.3 162 71.0
Gohir.D11G220900 Gossypium hirsutum HOM05D005870 ORTHO05D007216 3.7e-51 205.3 162 71.0
Gorai.007G237100 Gossypium raimondii HOM05D005870 ORTHO05D007216 3.7e-51 205.3 162 71.0
Prupe.6G188000 Prunus persica HOM05D005870 ORTHO05D007216 3.1e-50 202.2 163 71.8
MD00G1199600 Malus domestica HOM05D005870 ORTHO05D007216 4.0e-50 201.8 171 68.4
CiPaw.04G100500 Carya illinoinensis HOM05D005870 ORTHO05D007216 5.3e-50 201.4 172 73.3
Nn1g05359 Nelumbo nucifera HOM05D005870 ORTHO05D007216 5.3e-50 201.4 175 72.0
Sed0015800 Sechium edule HOM05D005870 ORTHO05D007216 1.5e-49 199.9 173 71.1
Hma1.2p1_0308F.1_g120250 Hydrangea macrophylla HOM05D005870 ORTHO05D007216 2.0e-49 199.5 175 69.7
Nn5g30105 Nelumbo nucifera HOM05D005870 ORTHO05D007216 2.6e-49 199.1 151 76.8
MSTRG.3774 Avicennia marina HOM05D005870 ORTHO05D007216 7.6e-49 197.6 171 68.4
MBI02_g35763_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 1.7e-48 196.4 158 73.4
Phvul.002G256700 Phaseolus vulgaris HOM05D005870 ORTHO05D007216 4.9e-48 194.9 177 70.1
Glyma.05G178000 Glycine max HOM05D005870 ORTHO05D007216 6.5e-48 194.5 172 70.9
Actinidia20008 Actinidia chinensis HOM05D005870 ORTHO05D007216 8.4e-48 194.1 170 69.4
Nitab4.5_0000430g0130 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.1e-47 193.7 170 67.6
CDE10G0106 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 2.5e-47 192.6 160 70.6
Nitab4.5_0006110g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 3.2e-47 192.2 170 68.2
PGR004G1211 Punica granatum HOM05D005870 ORTHO05D007216 3.2e-47 192.2 172 67.4
AT5G65220 Arabidopsis thaliana HOM05D005870 ORTHO05D007216 4.2e-47 191.8 175 66.9
FAN23G0590 Fragaria x ananassa HOM05D005870 ORTHO05D007216 4.2e-47 191.8 164 67.7
Rhsim10G0163500 Rhododendron simsii HOM05D005870 ORTHO05D007216 5.5e-47 191.4 170 68.8
VMungo0251G1964 Vigna mungo HOM05D005870 ORTHO05D007216 7.1e-47 191.0 177 68.4
RcHm_v2.0_Chr2g0113161 Rosa chinensis HOM05D005870 ORTHO05D007216 1.6e-46 189.9 162 66.0
PGSC0003DMG400033691 Solanum tuberosum HOM05D005870 ORTHO05D007216 1.6e-46 189.9 172 65.7
Cpa.g.sc615.2 Carica papaya HOM05D005870 ORTHO05D007216 2.1e-46 189.5 172 69.2
QL06p049269 Quercus lobata HOM05D005870 ORTHO05D007216 2.1e-46 189.5 177 67.2
Carub.0008s2608 Capsella rubella HOM05D005870 ORTHO05D007216 4.6e-46 188.3 173 65.3
Glyma.08G135000 Glycine max HOM05D005870 ORTHO05D007216 4.6e-46 188.3 172 68.6
Lsat_1_v5_gn_4_141420 Lactuca sativa HOM05D005870 ORTHO05D007216 4.6e-46 188.3 165 65.5
Oeu002170.1 Olea europaea HOM05D005870 ORTHO05D007216 4.6e-46 188.3 166 67.5
vmacro07307 Vaccinium macrocarpon HOM05D005870 ORTHO05D007216 4.6e-46 188.3 167 68.9
Sopen03g028660 Solanum pennellii HOM05D005870 ORTHO05D007216 6.0e-46 188.0 172 65.1
AL8G42760 Arabidopsis lyrata HOM05D005870 ORTHO05D007216 7.9e-46 187.6 175 65.7
FvH4_1g20710 Fragaria vesca HOM05D005870 ORTHO05D007216 1.0e-45 187.2 162 65.4
FAN19G2750 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.0e-45 187.2 162 65.4
CDE10G0428 Ceratophyllum demersum HOM05D005870 ORTHO05D007216 2.3e-45 186.0 163 67.5
ECA232G4208 Erigeron canadensis HOM05D005870 ORTHO05D007216 2.3e-45 186.0 152 68.4
Eucgr.I00441 Eucalyptus grandis HOM05D005870 ORTHO05D007216 3.0e-45 185.7 152 73.7
HanXRQChr15g0484171 Helianthus annuus HOM05D005870 ORTHO05D007216 3.0e-45 185.7 148 70.9
Solyc03g097950.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 3.0e-45 185.7 172 64.5
DCAR_014215 Daucus carota HOM05D005870 ORTHO05D007216 3.9e-45 185.3 170 64.1
Medtr8g090185 Medicago truncatula HOM05D005870 ORTHO05D007216 3.9e-45 185.3 180 66.7
Nitab4.5_0000033g0220 Nicotiana tabacum HOM05D005870 ORTHO05D007216 6.7e-45 184.5 161 68.3
Ca_17742_v3 Cicer arietinum L. HOM05D005870 ORTHO05D007216 8.7e-45 184.1 173 65.9
FAN26G0235 Fragaria x ananassa HOM05D005870 ORTHO05D007216 8.7e-45 184.1 162 64.8
FAN28G1626 Fragaria x ananassa HOM05D005870 ORTHO05D007216 1.1e-44 183.7 162 64.8
CANSAT01G0848 Cannabis sativa HOM05D005870 ORTHO05D007216 1.5e-44 183.3 159 67.3
Lj4g0027302 Lotus japonicus HOM05D005870 ORTHO05D007216 1.5e-44 183.3 177 65.5
ClCG10G008830 Citrullus lanatus HOM05D005870 ORTHO05D007216 1.9e-44 183.0 173 68.2
Nitab4.5_0004855g0010 Nicotiana tabacum HOM05D005870 ORTHO05D007216 1.9e-44 183.0 172 65.1
MBI05_g37050_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 4.3e-44 181.8 112 87.5
Lalb_Chr07g0185191 Lupinus albus HOM05D005870 ORTHO05D007216 7.4e-44 181.0 178 64.6
Sabra07G0077600 Salix brachista HOM05D005870 ORTHO05D007216 9.7e-44 180.6 281 45.9
Lalb_Chr12g0203881 Lupinus albus HOM05D005870 ORTHO05D007216 1.3e-43 180.3 167 68.3
CAN.G65.97 Capsicum annuum HOM05D005870 ORTHO05D007216 3.7e-43 178.7 162 67.9
Solyc06g072470.4 Solanum lycopersicum HOM05D005870 ORTHO05D007216 3.7e-43 178.7 169 64.5
Sopen06g028840 Solanum pennellii HOM05D005870 ORTHO05D007216 3.7e-43 178.7 169 64.5
unitig_747.g21825 Utricularia gibba HOM05D000660 ORTHO05D000766 6.3e-43 177.9 167 62.3
SalBow3G2704 Salvia bowleyana HOM05D005870 ORTHO05D007216 8.2e-43 177.6 171 63.7
PGSC0003DMG400026946 Solanum tuberosum HOM05D005870 ORTHO05D007216 8.2e-43 177.6 173 62.4
Cc07_g15090 Coffea canephora HOM05D005870 ORTHO05D007216 1.8e-42 176.4 172 61.0
Peaxi162Scf00171g00927 Petunia axillaris HOM05D005870 ORTHO05D007216 1.8e-42 176.4 167 64.1
arahy.Tifrunner.gnm1.ann1.Q6429D Arachis hypogaea HOM05D005870 ORTHO05D007216 3.1e-42 175.6 154 69.5
MD01G1031300 Malus domestica HOM05D005870 ORTHO05D007216 3.1e-42 175.6 143 70.6
arahy.Tifrunner.gnm1.ann1.K43FII Arachis hypogaea HOM05D005870 ORTHO05D007216 6.9e-42 174.5 156 69.9
CARHR279150 Cardamine hirsuta HOM05D005870 ORTHO05D007216 6.9e-42 174.5 179 64.2
TWI74G0695 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 6.9e-42 174.5 171 64.9
AUR62003803 Chenopodium quinoa HOM05D005870 ORTHO05D007216 9.0e-42 174.1 161 61.5
Lj2A546G34 Lonicera japonica HOM05D005870 ORTHO05D007216 9.0e-42 174.1 132 72.7
BcaC01g02758 Brassica carinata HOM05D005870 ORTHO05D007216 1.5e-41 173.3 174 62.6
BolC3t18343H Brassica oleracea HOM05D005870 ORTHO05D007216 1.5e-41 173.3 174 62.6
THA.LOC104801696 Tarenaya hassleriana HOM05D005870 ORTHO05D007216 3.4e-41 172.2 166 65.1
C03p60860 Brassica napus HOM05D005870 ORTHO05D007216 4.5e-41 171.8 174 62.6
Migut.H02353 Erythranthe guttata HOM05D005870 ORTHO05D007216 4.5e-41 171.8 170 59.4
SGA_v2.0_scaffold54G19505 Striga asiatica HOM05D005870 ORTHO05D007216 4.5e-41 171.8 171 62.6
Aqoxy6G00780 Aquilegia oxysepala HOM05D005870 ORTHO05D007216 5.9e-41 171.4 158 65.2
Sp2g28320 Schrenkiella parvula HOM05D005870 ORTHO05D007216 1.7e-40 169.9 179 60.3
TWI53G1299 Tripterygium wilfordii HOM05D005870 ORTHO05D007216 2.2e-40 169.5 149 69.8
BcaB02g09886 Brassica carinata HOM05D005870 ORTHO05D007216 5.0e-40 168.3 156 65.4
Thhalv10005022m.g Eutrema salsugineum HOM05D005870 ORTHO05D007216 5.0e-40 168.3 177 61.0
Sc03g0002050 Simmondsia chinensis HOM05D005870 ORTHO05D007216 5.0e-40 168.3 155 65.2
TPR.G6297 Trifolium pratense HOM05D005870 ORTHO05D007216 6.5e-40 167.9 169 60.9
A02p43790 Brassica napus HOM05D005870 ORTHO05D007216 1.9e-39 166.4 155 63.2
BraA02t09303Z Brassica rapa HOM05D005870 ORTHO05D007216 1.9e-39 166.4 155 63.2
Aa31LG1G16740 Aethionema arabicum HOM05D005870 ORTHO05D007216 7.2e-39 164.5 167 63.5
CsaV3_4G008900 Cucumis sativus L. HOM05D005870 ORTHO05D007216 7.2e-39 164.5 174 60.9
BcaB07g34228 Brassica carinata HOM05D005870 ORTHO05D007216 9.3e-39 164.1 156 65.4
EL10Ac6g15115 Beta vulgaris HOM05D005870 ORTHO05D007216 1.6e-38 163.3 175 56.6
A06p32070 Brassica napus HOM05D005870 ORTHO05D007216 7.9e-38 161.0 177 58.2
BraA06t26136Z Brassica rapa HOM05D005870 ORTHO05D007216 7.9e-38 161.0 177 58.2
PSO210G6840 Papaver somniferum HOM05D005870 ORTHO05D007216 8.8e-37 157.5 163 57.7
PSO447G0167 Papaver somniferum HOM05D005870 ORTHO05D007216 8.8e-37 157.5 163 57.7
AUR62001999 Chenopodium quinoa HOM05D005870 ORTHO05D007216 2.5e-36 156.0 165 55.8
Os02g0754300 Oryza sativa ssp. japonica HOM05D005870 ORTHO05D007216 3.3e-36 155.6 142 62.7
Zm00001eb249540 Zea mays HOM05D005870 ORTHO05D007216 5.3e-34 148.3 104 76.0
Zm00001eb194130 Zea mays HOM05D005870 ORTHO05D007216 9.1e-34 147.5 99 78.8
Zm00001eb255290 Zea mays HOM05D005870 ORTHO05D007216 4.5e-33 145.2 104 74.0
Zm00001eb335180 Zea mays HOM05D005870 ORTHO05D007216 4.5e-33 145.2 104 74.0
MELO3C018954.2 Cucumis melo HOM05D005870 ORTHO05D007216 5.9e-33 144.8 174 56.9
Psat7g055240 Pisum sativum HOM05D005870 ORTHO05D007216 1.0e-32 144.1 152 58.6
Hund13620 Selenicereus undatus HOM05D005870 ORTHO05D007216 2.9e-32 142.5 165 57.0
GSVIVG01004857001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.2e-30 137.1 79 94.9
GSVIVG01013304001 Vitis vinifera HOM05D005870 ORTHO05D007216 1.2e-30 137.1 79 94.9
Hund16294 Selenicereus undatus HOM05D005870 ORTHO05D007216 5.1e-29 131.7 178 50.0
Pp3c9_19800 Physcomitrium patens HOM05D005870 ORTHO05D007216 1.1e-28 130.6 120 62.5
Mapoly0011s0026 Marchantia polymorpha HOM05D005870 ORTHO05D007216 2.4e-26 122.9 138 52.2
SMO347G0042 Selaginella moellendorffii HOM05D005870 ORTHO05D007216 2.6e-25 119.4 109 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2528 Anthoceros agrestis HOM05D005870 ORTHO05D007216 5.9e-25 118.2 108 60.2
Cfa002651 Carpinus fangiana HOM05D005870 ORTHO05D007216 6.1e-22 108.2 109 57.8
Haze_24920 Corylus avellana HOM05D005870 ORTHO05D007216 3.0e-21 105.9 105 58.1
MSTRG.15716 Avicennia marina HOM05D005870 ORTHO05D007216 4.4e-20 102.1 122 56.6
Actinidia06560 Actinidia chinensis HOM05D005870 ORTHO05D007216 3.7e-19 99.0 112 58.9
SGA_v2.0_scaffold111G31512 Striga asiatica HOM05D005870 ORTHO05D007216 6.3e-19 98.2 119 55.5
HPP92_013107 Vanilla planifolia HOM05D005870 ORTHO05D007216 2.4e-18 96.3 131 48.1
CBR_g8034 Chara braunii HOM05D005870 ORTHO05D007216 2.9e-16 89.4 89 50.6
Haze_24918 Corylus avellana HOM05D009730 ORTHO05D000126 6.5e-16 88.2 62 79.0
Lj5C62T6 Lonicera japonica HOM05D005870 ORTHO05D007216 4.2e-15 85.5 75 64.0
MBI18_g38162_MAGBIO Magnolia biondii HOM05D005870 ORTHO05D007216 7.2e-15 84.7 80 65.0
ATR0782G037 Amborella trichopoda HOM05D005870 ORTHO05D007216 1.2e-14 84.0 98 51.0
HPP92_013094 Vanilla planifolia HOM05D005870 ORTHO05D007216 4.7e-14 82.0 58 70.7
BolC2t12461H Brassica oleracea HOM05D005870 ORTHO05D007216 1.5e-12 77.0 51 82.4
C02p63940 Brassica napus HOM05D000382 ORTHO05D000391 7.0e-10 68.2 62 67.7
MCO09G004 Micromonas commoda HOM05D005870 ORTHO05D007216 1.7e-08 63.5 73 43.8
Lj1P1094T14 Lonicera japonica HOM05D005870 ORTHO05D007216 5.5e-07 58.5 51 62.7


User provided reference genes

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