Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 1.1e-93 346.7 177 100.0
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 8.3e-70 267.3 160 82.5
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 7.0e-69 264.2 160 84.4
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 9.2e-69 263.8 158 83.5
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 1.2e-68 263.5 156 82.1
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 1.6e-68 263.1 157 82.2
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.6e-68 263.1 158 83.5
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.6e-68 263.1 158 83.5
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 7.8e-68 260.8 156 82.7
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.0e-67 260.4 159 79.9
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.3e-67 260.0 157 80.3
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 1.7e-67 259.6 160 79.4
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 2.3e-67 259.2 156 82.1
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 5.0e-67 258.1 160 78.8
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 8.6e-67 257.3 158 79.7
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 1.1e-66 256.9 156 82.1
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 1.5e-66 256.5 160 79.4
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 1.9e-66 256.1 154 81.8
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 1.9e-66 256.1 163 77.9
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 2.5e-66 255.8 163 76.7
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 2.5e-66 255.8 158 79.7
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 2.5e-66 255.8 160 79.4
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 3.3e-66 255.4 156 82.1
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 4.3e-66 255.0 158 79.7
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 5.6e-66 254.6 172 76.7
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 5.6e-66 254.6 162 79.6
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 9.5e-66 253.8 156 78.8
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 1.6e-65 253.1 149 82.6
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 2.1e-65 252.7 161 77.0
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 2.1e-65 252.7 160 78.8
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 3.6e-65 251.9 152 82.2
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 3.6e-65 251.9 158 78.5
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 3.6e-65 251.9 163 75.5
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 3.6e-65 251.9 151 84.1
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 8.0e-65 250.8 158 76.6
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 8.0e-65 250.8 150 82.0
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 1.1e-64 250.4 150 84.0
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 1.4e-64 250.0 154 79.2
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 1.4e-64 250.0 163 77.3
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.4e-64 250.0 158 77.2
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.4e-64 250.0 158 77.2
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 3.1e-64 248.8 159 78.6
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 3.1e-64 248.8 158 77.8
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 3.1e-64 248.8 156 77.6
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 4.0e-64 248.4 163 75.5
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 4.0e-64 248.4 160 76.2
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 4.0e-64 248.4 162 76.5
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 5.2e-64 248.1 152 79.6
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 5.2e-64 248.1 155 79.4
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 6.8e-64 247.7 158 77.2
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 8.9e-64 247.3 155 77.4
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 8.9e-64 247.3 159 77.4
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 8.9e-64 247.3 158 77.2
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 2.0e-63 246.1 159 76.7
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 2.6e-63 245.7 147 80.3
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.6e-63 245.7 159 77.4
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 2.6e-63 245.7 162 74.1
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 2.6e-63 245.7 162 74.1
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 2.6e-63 245.7 162 74.7
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 4.4e-63 245.0 152 78.9
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 7.5e-63 244.2 154 79.2
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 9.8e-63 243.8 161 77.6
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 2.2e-62 242.7 148 78.4
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 2.2e-62 242.7 158 74.1
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 2.2e-62 242.7 158 74.7
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 2.9e-62 242.3 154 78.6
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 2.9e-62 242.3 154 78.6
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 4.9e-62 241.5 158 73.4
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 4.9e-62 241.5 154 76.6
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 4.9e-62 241.5 154 76.6
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 6.4e-62 241.1 154 77.9
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 6.4e-62 241.1 163 73.6
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 6.4e-62 241.1 147 80.3
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 6.4e-62 241.1 154 77.3
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 6.4e-62 241.1 154 77.3
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 8.3e-62 240.7 154 77.3
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.1e-61 240.4 154 77.9
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 1.4e-61 240.0 150 80.0
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 1.9e-61 239.6 154 76.0
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.9e-61 239.6 147 81.0
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 2.4e-61 239.2 159 73.0
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 3.2e-61 238.8 147 78.9
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 5.4e-61 238.0 150 76.7
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 1.2e-60 236.9 146 80.1
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.7e-60 235.7 181 66.9
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 4.6e-60 235.0 145 77.9
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 7.8e-60 234.2 154 75.3
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 1.3e-59 233.4 151 74.2
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 6.6e-59 231.1 141 79.4
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 1.5e-58 229.9 154 72.7
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 1.9e-58 229.6 208 62.0
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 4.3e-58 228.4 158 72.8
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 5.6e-58 228.0 157 68.8
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 5.2e-56 221.5 154 72.7
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 2.6e-55 219.2 179 63.1
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.8e-49 199.1 170 62.4
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 1.8e-48 196.4 156 59.6
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 6.0e-44 181.4 127 74.0
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 6.0e-44 181.4 149 58.4
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 8.7e-43 177.6 154 57.1
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 5.6e-42 174.9 91 92.3
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 1.3e-41 173.7 91 90.1
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.6e-41 173.3 118 72.9
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 8.1e-41 171.0 149 61.1
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.8e-40 169.9 110 75.5
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 9.0e-40 167.5 264 42.0
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.5e-39 166.8 158 61.4
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 7.1e-37 157.9 160 50.6
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 1.2e-36 157.1 156 53.8
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 5.3e-32 141.7 151 46.4
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 3.9e-27 125.6 140 43.6
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 6.7e-27 124.8 84 71.4
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 3.9e-19 99.0 77 66.2
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 9.6e-18 94.4 63 71.4
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 3.4e-15 85.9 64 67.2
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.7e-14 83.6 95 48.4
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 8.4e-14 81.3 49 75.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 2.5e-13 79.7 55 72.7
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 5.5e-13 78.6 45 82.2
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 5.7e-10 68.6 37 89.2
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 2.8e-09 66.2 61 60.7
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 3.7e-09 65.9 37 83.8
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 4.8e-09 65.5 148 29.1


User provided reference genes

Program Settings